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Development and validation of a small SNP panel for feed efficiency in beef cattle
M K Abo-Ismail1,2, N Lansink1, E Akanno1
1Livestock Gentec at University of Alberta, Edmonton, AB, Canada.
Journal of Animal Science
|February 2, 2018
Summary
Researchers developed a cost-effective SNP panel to improve feed efficiency in beef cattle. This panel identified key genes influencing traits like average daily gain and residual feed intake, aiding genetic selection.
Area of Science:
- Animal Genetics
- Quantitative Genetics
- Genomic Selection
Background:
- Feed efficiency is crucial for sustainable beef production.
- Genetic improvement of feed efficiency requires accurate genomic tools.
- Existing genotyping panels may not be cost-effective for all breeding programs.
Purpose of the Study:
- To develop and validate a cost-effective single nucleotide polymorphism (SNP) panel for genetic improvement of feed efficiency in beef cattle.
- To identify SNPs and genes associated with feed efficiency traits.
- To estimate genomic heritability using the developed SNP panel.
Main Methods:
- Screening of SNPs for functional impact and allele frequency in Angus and Hereford cattle.
- Association analyses using allele substitution and genotypic models on Angus, Hereford, and crossbred cattle.
- Estimation of genomic heritabilities using the developed SNP panel, significant SNPs, and a commercial 50K panel.
Main Results:
- Identified 63 SNPs within 43 genes associated with feed efficiency traits (P ≤ 0.05).
- Found significant effects of SNPs in GHR, CAST, MKI67, and CNTFR genes on residual feed intake (RFI), RFI adjusted for backfat (RFIf), and average daily gain (ADG).
- Gene enrichment analysis highlighted gland development and ion/cation transport as key physiological mechanisms, involving the Jak-STAT signaling pathway.
Conclusions:
- The developed 63-SNP panel is cost-effective and can be used for genetic improvement of feed efficiency in beef cattle.
- Identified SNPs and genes provide valuable targets for molecular breeding values.
- The study demonstrates the potential of targeted SNP panels for enhancing genetic gain in livestock populations.
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