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Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome
Published on: June 15, 2016
Time-dependent alterations in mRNA, protein and microRNA during in vitro adipogenesis
Mahesh S Krishna1, A Aneesh Kumar1, K A Abdul Jaleel2
1Diabetes Biology Lab, Division of Cardiovascular and Diabetes Biology, Rajiv Gandhi Centre for Biotechnology, Poojappura, Thiruvananthapuram, Kerala, India.
Abstract:
Adipogenesis is a complex biological process involving synchronised interplay of different nuclear receptors. Aberration in the process leads to obesity and associated disorders. Addressing the complexity of molecular mechanisms, we worked on characterising the changes in NR1C3/PPARγ-, NR1H3/LXRα- and NCoAs/SRCs-associated microRNA, genes and proteins during different time points of adipogenesis. Glucose uptake of differentiating cells was checked at selected time points with FACS. Observations on gene expression pattern pointed a correlation in adipogenic-related genes and increased expression of PPARγ, but not LXRα. Western blot experiments also supported the gene expression pattern. MicroRNAs that vary during adipogenesis was selected using bioinformatics tools and database. Real-time PCR-based experiments showed a change in the expression of mmu-mir-23a-3p, 206-3p, 17-3p, 126a-3p and 1a-3p. Mmu-mir-23a-3p showed a gradual decrease in expression corresponding to the progression of adipogenesis. MicroRNA 23a-3p and 1a-3p showed positive association to the mRNA levels of NCoA1 and 3. Overall, the study elaborates time-dependent variations in nucleic acid and protein expression during adipogenesis in accordance to fatty acid and glucose metabolism.
Insights
This study details molecular changes during adipogenesis, revealing how microRNA, gene, and protein expressions correlate with fat cell development and metabolism. Key findings highlight specific microRNAs
Area of Science:
- Molecular Biology
- Cellular Metabolism
- Endocrinology
Background:
- Adipogenesis, the process of fat cell differentiation, is crucial for energy homeostasis but its dysregulation contributes to obesity.
- Understanding the intricate molecular mechanisms involving nuclear receptors, microRNAs, and their targets is essential for addressing metabolic disorders.
Purpose of the Study:
- To characterize time-dependent changes in microRNA, gene, and protein expression associated with key nuclear receptors during adipogenesis.
- To investigate the roles of PPARγ, LXRα, and NCoAs/SRCs in regulating adipogenesis and associated metabolic processes.
Main Methods:
- Utilized bioinformatics tools and databases to identify relevant microRNAs.
- Employed FACS for glucose uptake analysis, real-time PCR for gene and microRNA expression profiling, and Western blotting for protein analysis.
Main Results:
- Observed a correlation between adipogenic gene expression and increased PPARγ, but not LXRα, expression.
- Identified significant changes in mmu-mir-23a-3p, mmu-mir-206-3p, mmu-mir-17-3p, mmu-mir-126a-3p, and mmu-mir-1a-3p during adipogenesis.
- Found mmu-mir-23a-3p expression decreased with adipogenesis progression and showed a positive association with NCoA1 and NCoA3 mRNA levels.
Conclusions:
- The study elucidates the dynamic temporal variations in nucleic acid and protein expression during adipogenesis.
- Findings provide insights into the coordinated regulation of fatty acid and glucose metabolism by specific microRNAs and nuclear receptors.
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