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Updated: Feb 15, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Worldwide distribution of common IDUA pathogenic variants
E Poletto1,2, G Pasqualim1,2, R Giugliani1,2,3,4,5
1Gene Therapy Center, Hospital de Clínicas de Porto Alegre, Porto Alegre, Brazil.
Abstract:
Mucopolysaccharidosis type I (MPS I) is a rare disorder caused by deleterious sequence variants in the α-L-iduronidase (IDUA) gene. More than 200 pathogenic variants have been described so far, but their frequencies have not yet been analyzed on a worldwide scale. To address this, we analyzed the genotypes of MPS I patients from 35 published studies papers. The most common pathogenic variant observed was p.Trp402Ter. With frequencies of up to 63%, it was the major allele in most European countries, America and Australia. The variant p.Gln70Ter was also frequent; it was found mainly in Northern and Eastern Europe. The most frequent variant in North African countries was p.Pro533Arg; in Morocco, it represented more than 90% of mutant alleles. Variants observed in East Asians were not found in Western populations, including c.1190-1G>A, p.Ala79Val, p.Leu346Arg and c.613_617dupTGCTC. Conversely, p.Trp402Ter and p.Pro533Arg were not found in patients from East Asia. In conclusion, the most common pathogenic IDUA variant in MPS I patients are p.Trp402Ter, p.Gln70Ter and p.Pro533Arg. Knowledge about the genetic background of MPS I for each population is essential when developing new genotype-targeted therapies, as well as to enable faster genetic analysis and improve patient management.
Insights
Mucopolysaccharidosis type I (MPS I) is a rare genetic disorder. Analyzing worldwide patient genotypes reveals common pathogenic variants in the IDUA gene, crucial for targeted therapies and genetic analysis.
Area of Science:
- Genetics
- Rare Diseases
- Biochemistry
Background:
- Mucopolysaccharidosis type I (MPS I) is a rare genetic disorder.
- It results from deleterious sequence variants in the alpha-L-iduronidase (IDUA) gene.
- Over 200 pathogenic variants are known, but their global frequencies are unanalyzed.
Purpose of the Study:
- To analyze the worldwide frequencies of pathogenic variants in the IDUA gene in MPS I patients.
- To identify population-specific variant distributions.
- To inform the development of genotype-targeted therapies and improve patient management.
Main Methods:
- Systematic review and genotype analysis of MPS I patients from 35 published studies.
- Frequency analysis of pathogenic IDUA variants across different global populations.
Main Results:
- The p.Trp402Ter variant is the most common globally, prevalent in Europe, America, and Australia.
- p.Gln70Ter is frequent in Northern and Eastern Europe.
- p.Pro533Arg is the predominant variant in North Africa, exceeding 90% in Morocco.
- Distinct variants were observed in East Asian populations (e.g., c.1190-1G>A, p.Ala79Val) not found in Western populations, and vice versa for p.Trp402Ter and p.Pro533Arg.
Conclusions:
- p.Trp402Ter, p.Gln70Ter, and p.Pro533Arg are the most frequent pathogenic IDUA variants in MPS I.
- Understanding population-specific genetic backgrounds is vital for developing targeted therapies, accelerating genetic analysis, and enhancing patient care for MPS I.
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