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Updated: Feb 14, 2026

Author Spotlight: A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data
Published on: December 1, 2023
Long noncoding RNA LISPR1 is required for S1P signaling and endothelial cell function
Ivana Josipovic1, Beatrice Pflüger1, Christian Fork1
1Goethe-University, Institute for Cardiovascular Physiology, Frankfurt am Main, Germany; German Center of Cardiovascular Research (DZHK), Partner site RheinMain, Frankfurt, Germany.
The long noncoding RNA LISPR1 regulates endothelial cell function by controlling Sphingosine-1-Phosphate receptor 1 (S1PR1) expression. LISPR1 knockdown impairs S1P signaling and endothelial cell migration, suggesting its role in pulmonary diseases.
Area of Science:
- Molecular Biology
- Cell Biology
- Genomics
Background:
- Sphingosine-1-Phosphate (S1P) signaling is crucial in endothelial cells, primarily mediated by S1P receptor 1 (S1PR1).
- Long noncoding RNAs (lncRNAs) are emerging regulators of gene expression.
- LISPR1, a lncRNA antisense to S1PR1, is investigated for its role in endothelial S1P signaling.
Purpose of the Study:
- To determine if LISPR1 regulates endothelial S1PR1 expression and subsequent S1P signaling.
- To elucidate the mechanism by which LISPR1 influences S1PR1 expression.
- To assess the relevance of LISPR1 and S1PR1 in human pulmonary diseases.
Main Methods:
- In vitro transcription/translation and coding potential assessment to confirm LISPR1 as noncoding.
- qRT-PCR and RNA-Seq to analyze LISPR1 and S1PR1 expression in endothelial cells and lung tissue.
- LISPR1 knockdown experiments to evaluate effects on endothelial cell function and S1PR1 regulation.
Main Results:
- LISPR1 is a noncoding RNA, localized in cytoplasm and nucleus, highly expressed in endothelial cells and lung tissue.
- LISPR1 and S1PR1 expression are downregulated in COPD and induced by inflammation, shear stress, and statins.
- LISPR1 knockdown reduced S1PR1 expression, impaired S1P-induced endothelial cell migration and spheroid outgrowth, and altered transcriptional regulation of S1PR1.
Conclusions:
- The lncRNA LISPR1 is a novel regulator of endothelial S1PR1 expression and function.
- LISPR1 plays a critical role in S1P downstream signaling pathways in endothelial cells.
- LISPR1 represents a potential therapeutic target for pulmonary diseases characterized by altered S1P signaling.
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