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Updated: Feb 14, 2026

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Published on: January 19, 2022
High-quality endoscope reprocessing decreases endoscope contamination
P Decristoforo1, J Kaltseis1, A Fritz1
1Division of Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria.
Objectives:
Several outbreaks of severe infections due to contamination of gastrointestinal (GI) endoscopes, mainly duodenoscopes, have been described. The rate of microbial endoscope contamination varies dramatically in literature. The aim of this multicentre prospective study was to evaluate the hygiene quality of endoscopes and automated endoscope reprocessors (AERs) in Tyrol/Austria.
Methods:
In 2015 and 2016, a total of 463 GI endoscopes and 105 AERs from 29 endoscopy centres were analysed by a routine (R) and a combined routine and advanced (CRA) sampling procedure and investigated for microbial contamination by culture-based and molecular-based analyses.
Results:
The contamination rate of GI endoscopes was 1.3%-4.6% according to the national guideline, suggesting that 1.3-4.6 patients out of 100 could have had contacts with hygiene-relevant microorganisms through an endoscopic intervention. Comparison of R and CRA sampling showed 1.8% of R versus 4.6% of CRA failing the acceptance criteria in phase I and 1.3% of R versus 3.0% of CRA samples failing in phase II. The most commonly identified indicator organism was Pseudomonas spp., mainly Pseudomonas oleovorans. None of the tested viruses were detected in 40 samples. While AERs in phase I failed (n = 9, 17.6%) mainly due to technical faults, phase II revealed lapses (n = 6, 11.5%) only on account of microbial contamination of the last rinsing water, mainly with Pseudomonas spp.
Conclusions:
In the present study the contamination rate of endoscopes was low compared with results from other European countries, possibly due to the high quality of endoscope reprocessing, drying and storage.
Insights
Gastrointestinal endoscope contamination rates in Austria were low, with Pseudomonas species being the most common contaminant. High-quality reprocessing, drying, and storage likely contributed to these favorable hygiene results.
Area of Science:
- Medical Microbiology
- Infection Control
- Gastroenterology
Background:
- Outbreaks of severe infections linked to contaminated gastrointestinal (GI) endoscopes, particularly duodenoscopes, have been reported globally.
- Microbial contamination rates of GI endoscopes vary significantly in existing literature.
- Evaluating endoscope hygiene is crucial for patient safety in endoscopy centers.
Purpose of the Study:
- To assess the hygiene quality of gastrointestinal endoscopes and automated endoscope reprocessors (AERs) in Tyrol, Austria.
- To determine the microbial contamination rates of endoscopes and AERs using routine and advanced sampling methods.
- To identify common microbial contaminants and potential sources of contamination in endoscopy reprocessing workflows.
Main Methods:
- A multicentre prospective study conducted in 2015-2016 analyzed 463 GI endoscopes and 105 AERs from 29 endoscopy centers.
- Both routine (R) and combined routine and advanced (CRA) sampling procedures were employed.
- Microbial contamination was investigated using culture-based and molecular-based analyses.
Main Results:
- The contamination rate of GI endoscopes ranged from 1.3% to 4.6% based on national guidelines.
- The CRA sampling method revealed higher failure rates (4.6% in phase I, 3.0% in phase II) compared to routine sampling (1.8% in phase I, 1.3% in phase II).
- Pseudomonas spp., primarily Pseudomonas oleovorans, was the most frequently identified indicator organism; no tested viruses were detected. AERs showed technical faults in phase I and microbial contamination in phase II.
Conclusions:
- The contamination rate of endoscopes in this Austrian study was notably low compared to other European countries.
- High-quality endoscope reprocessing, effective drying, and proper storage practices are suggested as key factors for maintaining low contamination levels.
- The findings underscore the importance of rigorous adherence to reprocessing protocols to prevent endoscope-related infections.
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