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CONCORD biomarker prediction for novel drug introduction to different cancer types
Youngchul Kim1, Patrick M Dillon2, Taesung Park3
1Department of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, FL, USA.
Abstract:
Many cancer therapeutic agents have shown to be effective for treating multiple cancer types. Yet major challenges exist toward introducing a novel drug used in one cancer type to different cancer types, especially when a relatively small number of patients with the other cancer type often benefit from anti-cancer therapy with the drug. Recently, many novel agents were introduced to different cancer types together with companion biomarkers which were obtained or biologically assumed from the original cancer type. However, there is no guarantee that biomarkers from one cancer can directly predict a therapeutic response in another. To tackle this challenging question, we have developed a concordant expression biomarker-based technique ("CONCORD") that overcomes these limitations. CONCORD predicts drug responses from one cancer type to another by identifying concordantly co-expressed biomarkers across different cancer systems. Application of CONCORD to three standard chemotherapeutic agents and two targeted agents demonstrated its ability to accurately predict the effectiveness of a drug against new cancer types and predict therapeutic response in patients.
Insights
A new method called CONCORD predicts cancer drug effectiveness across different cancer types. It identifies shared biomarkers, improving treatment predictions for novel therapies.
Area of Science:
- Oncology
- Biomarker Discovery
- Translational Medicine
Background:
- Many cancer drugs are effective across multiple cancer types, but predicting efficacy in new cancers is challenging.
- Companion biomarkers identified in one cancer may not accurately predict response in others.
- Small patient populations often benefit from therapies, necessitating predictive tools for broader application.
Purpose of the Study:
- To develop a novel computational technique for predicting anti-cancer drug responses across different cancer types.
- To overcome limitations of traditional biomarker-based prediction methods.
- To identify concordantly co-expressed biomarkers for cross-cancer drug response prediction.
Main Methods:
- Developed a concordant expression biomarker-based technique (CONCORD).
- CONCORD identifies co-expressed biomarkers that are consistently found across different cancer types.
- Applied CONCORD to evaluate drug responses for standard chemotherapeutic and targeted agents.
Main Results:
- CONCORD accurately predicted drug effectiveness in new cancer types.
- The technique demonstrated reliable prediction of therapeutic response in patients.
- Validated the approach using multiple chemotherapeutic and targeted agents.
Conclusions:
- CONCORD offers a robust method for predicting cross-cancer drug efficacy.
- This approach enhances the potential for repurposing cancer therapies.
- CONCORD facilitates more accurate patient stratification for targeted cancer treatments.
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