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Updated: Feb 14, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Mutations at multiple CDK phosphorylation consensus sites on Cdt2 increase the affinity of CRL4Cdt2 for PCNA and its
Kohei Nukina1, Akiyo Hayashi1, Yasushi Shiomi1
1Graduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.
Abstract:
CRL4Cdt2 ubiquitin ligase plays an important role maintaining genome integrity during the cell cycle. A recent report suggested that Cdk1 negatively regulates CRL4Cdt2 activity through phosphorylation of its receptor, Cdt2, but the involvement of phosphorylation remains unclear. To address this, we mutated all CDK consensus phosphorylation sites located in the C-terminal half region of Cdt2 (Cdt2-18A) and examined the effect on substrate degradation. We show that both cyclinA/Cdk2 and cyclinB/Cdk1 phosphorylated Cdt2 in vitro and that phosphorylation was reduced by the 18A mutation both in vitro and in vivo. The 18A mutation increased the affinity of Cdt2 to PCNA, and a high amount of Cdt2-18A was colocalized with PCNA foci during S phase in comparison with Cdt2-WT. Poly-ubiquitination activity to Cdt1 was concomitantly enhanced in cells expressing Cdt2-18A. Other CRL4Cdt2 substrates, Set8 and thymine DNA glycosylase, begin to accumulate around late S phase to G2 phase, but the accumulation was prevented in Cdt2-18A cells. Furthermore, mitotic degradation of Cdt1 after UV irradiation was induced in these cells. Our results suggest that CDK-mediated phosphorylation of Cdt2 inactivates its ubiquitin ligase activity by reducing its affinity to PCNA, an important strategy for regulating the levels of key proteins in the cell cycle.
Insights
Cyclin-dependent kinases (CDKs) regulate cell cycle progression by phosphorylating Cdt2, a key component of the CRL4Cdt2 ubiquitin ligase. This phosphorylation reduces Cdt2
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- Ubiquitin Ligase Activity
Background:
- The CRL4Cdt2 ubiquitin ligase is crucial for maintaining genome integrity during the cell cycle.
- Previous studies suggested a negative regulatory role for Cdk1 via Cdt2 phosphorylation, but this mechanism remained unclear.
Purpose of the Study:
- To investigate the role of CDK-mediated phosphorylation of Cdt2 in regulating CRL4Cdt2 activity.
- To determine how Cdt2 phosphorylation affects its interaction with PCNA and substrate degradation.
Main Methods:
- Site-directed mutagenesis of Cdt2 to create a non-phosphorylatable mutant (Cdt2-18A).
- In vitro and in vivo phosphorylation assays using cyclinA/Cdk2 and cyclinB/Cdk1.
- Analysis of Cdt2-PCNA interaction, substrate degradation (Cdt1, Set8, thymine DNA glycosylase), and ubiquitination activity.
Main Results:
- CDK phosphorylation of Cdt2 was confirmed in vitro and in vivo, and significantly reduced in the Cdt2-18A mutant.
- The Cdt2-18A mutation enhanced Cdt2's affinity for PCNA, leading to increased colocalization with PCNA foci during S phase.
- CRL4Cdt2-mediated poly-ubiquitination of Cdt1 was enhanced, and degradation of Cdt1, Set8, and thymine DNA glycosylase was prevented in Cdt2-18A cells.
Conclusions:
- CDK-mediated phosphorylation of Cdt2 inactivates CRL4Cdt2 ubiquitin ligase activity by decreasing its affinity to PCNA.
- This phosphorylation-dependent regulation is essential for controlling the levels of key cell cycle proteins.
- The findings reveal a critical mechanism for maintaining genome stability and proper cell cycle progression.
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