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Updated: Feb 14, 2026

Gene Expression Profiling of Infecting Microbes Using a Digital Bar-coding Platform
Published on: January 13, 2016
Comparison of Host Gene Expression Profiles in Spleen Tissues of Genetically Susceptible and Resistant Mice during
Wen-Yu Cheng1, Huai-Jie Jia1, Xiao-Bing He1
1State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Public Health of Agriculture Ministry, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu 730046, China.
Abstract:
Ectromelia virus (ECTV), the causative agent of mousepox, has emerged as a valuable model for investigating the host-Orthopoxvirus relationship as it relates to pathogenesis and the immune response. ECTV is a mouse-specific virus and causes high mortality in susceptible mice strains, including BALB/c and C3H, whereas C57BL/6 and 129 strains are resistant to the disease. To understand the host genetic factors in different mouse strains during the ECTV infection, we carried out a microarray analysis of spleen tissues derived from BALB/c and C57BL/6 mice, respectively, at 3 and 10 days after ECTV infection. Differential Expression of Genes (DEGs) analyses revealed distinct differences in the gene profiles of susceptible and resistant mice. The susceptible BALB/c mice generated more DEGs than the resistant C57BL/6 mice. Additionally, gene ontology and KEGG pathway analysis showed the DEGs of susceptible mice were involved in innate immunity, apoptosis, metabolism, and cancer-related pathways, while the DEGs of resistant mice were largely involved in MAPK signaling and leukocyte transendothelial migration. Furthermore, the BALB/c mice showed a strong induction of interferon-induced genes, which, however, were weaker in the C57BL/6 mice. Collectively, the differential transcriptome profiles of susceptible and resistant mouse strains with ECTV infection will be crucial for further uncovering the molecular mechanisms of the host-Orthopoxvirus interaction.
Insights
Ectromelia virus (ECTV) infection reveals distinct gene expression differences between susceptible and resistant mouse strains. Understanding these host genetic factors is key to deciphering Orthopoxvirus-host interactions and developing effective countermeasures.
Area of Science:
- Virology
- Immunology
- Genomics
Background:
- Ectromelia virus (ECTV) causes mousepox and serves as a model for Orthopoxvirus pathogenesis.
- Mouse strains exhibit varying susceptibility to ECTV, with BALB/c being susceptible and C57BL/6 resistant.
- Host genetic factors influence disease outcome during viral infections.
Purpose of the Study:
- To investigate host genetic differences influencing ECTV infection outcomes.
- To compare gene expression profiles in susceptible versus resistant mouse strains post-ECTV infection.
Main Methods:
- Microarray analysis of spleen tissues from BALB/c and C57BL/6 mice at 3 and 10 days post-ECTV infection.
- Differential Gene Expression (DEG) analysis.
- Gene Ontology (GO) and KEGG pathway enrichment analysis.
Main Results:
- Susceptible BALB/c mice displayed significantly more DEGs than resistant C57BL/6 mice.
- DEGs in BALB/c mice were associated with innate immunity, apoptosis, metabolism, and cancer pathways.
- DEGs in C57BL/6 mice were linked to MAPK signaling and leukocyte transendothelial migration.
- Interferon-induced gene expression was stronger in susceptible BALB/c mice compared to resistant C57BL/6 mice.
Conclusions:
- Differential host gene expression profiles correlate with ECTV susceptibility.
- These findings provide insights into molecular mechanisms underlying Orthopoxvirus-host interactions.
- Transcriptome data can guide future research on host-specific antiviral responses.
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