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Updated: Feb 14, 2026

An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome
Published on: September 20, 2022
Untargeted Metabolomics Reveal Lipid Alterations upon 2-Deoxyglucose Treatment in Human HaCaT Keratinocytes
Pierre Le Pogam1, Mickael Doué1, Yann Le Page2
1Institute of Electronics and Telecommunications of Rennes (IETR), UMR CNRS 6164, University of Rennes , Campus de Beaulieu, 263 avenue du Général Leclerc, 35042 Rennes Cedex, France.
Abstract:
The glucose analogue 2-deoxyglucose (2-DG) impedes cancer progression in animal models and is currently being assessed as an anticancer therapy, yet the mode of action of this drug of high clinical significance has not been fully delineated. In an attempt to better characterize its pharmacodynamics, an integrative UPLC-Q-Exactive-based joint metabolomic and lipidomic approach was undertaken to evaluate the metabolic perturbations induced by this drug in human HaCaT keratinocyte cells. R-XCMS data processing and subsequent multivariate pattern recognition, metabolites identification, and pathway analyses identified eight metabolites that were most significantly changed upon a 3 h 2-DG exposure. Most of these dysregulated features were emphasized in the course of lipidomic profiling and could be identified as ceramide and glucosylceramide derivatives, consistently with their involvement in cell death programming. Even though metabolomic analyses did not generally afford such clear-cut dysregulations, some alterations in phosphatidylcholine and phosphatidylethanolamine derivatives could be highlighted as well. Overall, these results support the adequacy of the proposed analytical workflow and might contribute to a better understanding of the mechanisms underlying the promising effects of 2-DG.
Insights
The glucose analogue 2-deoxyglucose (2-DG) shows promise as an anticancer therapy by altering lipid metabolism, particularly affecting ceramides and glucosylceramides, which are linked to cell death pathways.
Area of Science:
- Biochemistry
- Cancer Biology
- Metabolomics
Background:
- 2-deoxyglucose (2-DG) is a glucose analogue investigated for anticancer properties.
- Its precise mechanism of action in cancer therapy remains incompletely understood.
- Understanding 2-DG's pharmacodynamics is crucial for its clinical application.
Purpose of the Study:
- To characterize the metabolic perturbations induced by 2-DG in human HaCaT keratinocytes.
- To elucidate the pharmacodynamics of 2-DG using a joint metabolomic and lipidomic approach.
- To identify key metabolites and pathways affected by 2-DG exposure.
Main Methods:
- Utilized an integrated UPLC-Q-Exactive-based metabolomic and lipidomic analysis.
- Employed XCMS data processing for feature detection and multivariate analysis.
- Performed metabolite identification and pathway analysis to interpret results.
Main Results:
- Identified eight significantly altered metabolites after 3 hours of 2-DG exposure.
- Lipidomic profiling revealed significant changes in ceramide and glucosylceramide derivatives.
- Metabolomic analysis indicated alterations in phosphatidylcholine and phosphatidylethanolamine derivatives.
Conclusions:
- The study highlights the significant impact of 2-DG on lipid metabolism, particularly ceramides.
- Findings suggest 2-DG's mechanism involves pathways related to cell death programming.
- The integrated analytical workflow effectively characterized 2-DG-induced metabolic changes, aiding in understanding its anticancer effects.
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