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Updated: Feb 14, 2026

Production and Characterization of Human Macrophages from Pluripotent Stem Cells
Published on: April 16, 2020
Generating tissue-resident macrophages from pluripotent stem cells: Lessons learned from microglia
Christel Claes1, Johanna Van den Daele1, Catherine M Verfaillie1
1Department of Development and Regeneration, Stem Cell and Developmental Biology, Stem Cell Institute Leuven, KU Leuven, Leuven, Belgium.
Abstract:
Over the past decades, the importance of the immune system in a broad scope of pathologies, has drawn attention towards tissue-resident macrophages, such as microglia in the brain. To enable the study of for instance microglia, it is crucial to recreate in vitro (and in vivo) assays. However, very fast loss of tissue-specific features of primary tissue resident macrophages, including microglia, upon in vitro culture has complicated such studies. Moreover, limited knowledge of macrophage developmental pathways and the role of local 'niche factors', has hampered the generation of tissue-resident macrophages from pluripotent stem cells (PSC). Recent data on the ontogeny of tissue-resident macrophages, combined with bulk and single cell RNAseq studies have identified the distinct origins and gene profile of microglia compared to other myeloid cells. As a result, over the past years, protocols have been published to create hPSC-derived microglia-'like' cells, as these cells are considered potential new therapeutic targets for therapies to treat neurodegenerative diseases. In this review we will provide an overview of different approaches taken to generate human microglia in vitro, taking into account their origin, and resemblance to their in vivo counterpart. Finally, we will discuss cell-extrinsic (culture conditions) and intrinsic factors (transcriptional machinery and epigenetics) that we believe can improve future differentiation protocols of tissue-resident macrophages from stem cells.
Insights
Generating microglia in vitro is crucial for studying neurodegenerative diseases. This review explores methods for creating human microglia-like cells from pluripotent stem cells (PSCs), focusing on improving differentiation protocols.
Area of Science:
- Neuroscience
- Immunology
- Stem Cell Biology
Background:
- Tissue-resident macrophages, like microglia in the brain, are vital in various pathologies.
- Primary microglia lose tissue-specific features rapidly in vitro, complicating research.
- Generating tissue-resident macrophages from pluripotent stem cells (PSCs) is challenging due to limited knowledge of developmental pathways and niche factors.
Purpose of the Study:
- To review current approaches for generating human microglia in vitro from PSCs.
- To analyze the origin and in vivo resemblance of these derived cells.
- To discuss factors for improving future differentiation protocols.
Main Methods:
- Review of existing literature on microglia generation protocols.
- Analysis of ontogeny data and gene expression profiles (bulk and single-cell RNAseq).
- Discussion of cell-extrinsic (culture conditions) and intrinsic factors (transcriptional machinery, epigenetics).
Main Results:
- Recent advances in understanding macrophage ontogeny and gene profiles have enabled the development of protocols for human PSC-derived microglia-like cells.
- These cells are considered promising for therapeutic applications in neurodegenerative diseases.
- Various protocols exist, differing in their approach to mimicking in vivo microglia characteristics.
Conclusions:
- Generating functional human microglia in vitro from PSCs is advancing, offering new avenues for disease modeling and therapy.
- Optimizing culture conditions and understanding intrinsic cellular mechanisms are key to enhancing differentiation protocols.
- Further research into cell-extrinsic and intrinsic factors will refine the generation of these crucial immune cells for therapeutic use.
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