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Common module analysis reveals prospective targets and mechanisms of pediatric adrenocortical adenoma and carcinoma
Anurag Kulshrestha1, Shikha Suman2
1Bioinformatics Division, National Bureau of Animal Genetic Resources, Karnal, Haryana 132001, India.
Abstract:
Pediatric adrenocortical carcinoma and adrenocortical adenoma are two rare diseases affecting children. Molecular analyses were performed to identify commonalities in gene expression between the diseases. Differentially expressed genes were identified for the pediatric adrenocortical adenoma and carcinoma tissues, as compared with normal tissues, using the expression dataset. Protein-protein interaction (PPI) networks were constructed for adenoma and carcinoma disease models, and common modules among the diseases were identified. A total of two common modules with 14 nodes and 20 nodes were revealed among the adenoma and carcinoma networks, respectively. Genes of the common modules were also identified to be the common hub genes of the disease models. Enrichment of the genes of the common modules suggested associations with steroid biosynthesis, the proteasome, cell cycle and metabolic pathways. Modularity, topological and functional analysis of the PPI networks revealed common modules among pediatric adenoma and carcinoma disease models, which provided insight into the underlying disease mechanisms and suggesting prospective targets for future study.
Insights
This study identified common molecular pathways in pediatric adrenocortical adenoma and carcinoma. These findings offer insights into rare pediatric adrenal tumors and potential therapeutic targets.
Area of Science:
- Endocrinology
- Molecular Biology
- Pediatric Oncology
Background:
- Pediatric adrenocortical tumors, including adenoma and carcinoma, are rare childhood diseases.
- Understanding shared molecular mechanisms is crucial for developing effective treatments.
Purpose of the Study:
- To identify common gene expression patterns and molecular pathways in pediatric adrenocortical adenoma and carcinoma.
- To explore potential therapeutic targets by analyzing protein-protein interaction networks.
Main Methods:
- Differential gene expression analysis comparing tumor tissues with normal tissues.
- Construction and analysis of protein-protein interaction (PPI) networks for adenoma and carcinoma.
- Identification of common modules and hub genes within the PPI networks.
Main Results:
- Two common modules were identified in the protein-protein interaction networks for adenoma and carcinoma.
- Common hub genes were found within these modules, linking the two diseases.
- Enrichment analysis revealed associations with steroid biosynthesis, proteasome, cell cycle, and metabolic pathways.
Conclusions:
- Shared molecular mechanisms, particularly in steroid biosynthesis and cell cycle regulation, underlie pediatric adrenocortical adenoma and carcinoma.
- The identified common modules and hub genes represent potential therapeutic targets for these rare pediatric tumors.
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