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Updated: Feb 14, 2026

Separation and Fractionation of Cell Wall and Cell Membrane Proteins from Mycobacterium tuberculosis for Downstream Protein Analysis
Published on: September 26, 2025
Evidence for dispensability of protein kinase R in host control of tuberculosis
Shashirekha Mundhra1, Ruslana Bryk2, Natalie Hawryluk3
1Immunology and Microbial Pathogenesis Program, Weill Graduate School of Medical Sciences of Cornell University, New York City, NY, USA.
Abstract:
Genetic deficiency of protein kinase R (PKR) in mice was reported to enhance macrophage activation in vitro in response to interferon-γ (IFNγ) and to reduce the burden of Mycobacterium tuberculosis (Mtb) in vivo (Wu et al. PloS One. 2012 7:e30512). Consistent with this, treatment of wild-type (WT) macrophages in vitro with a novel PKR inhibitor (Bryk et al., Bioorg. Med. Chem. Lett. 2011 21:4108-4114) also enhanced IFN-γ-dependent macrophage activation (Wu et al. PloS One. 2012 7:e30512). Here we show that co-treatment with IFN-γ and a new PKR inhibitor identified herein to be highly but not completely selective likewise induced macrophages to produce more reactive nitrogen intermediates (RNI) and tumor necrosis factor alpha (TNF-α) and less interleukin 10 (IL-10) than seen with IFN-γ alone. Unexpectedly, however, this new PKR inhibitor had a comparable effect on PKR-deficient macrophages. Retrospective investigation revealed that the PKR-deficient mice in (Wu et al. PloS One. 2012 7:e30512) had not been backcrossed. On comparing genetically matched PKR-deficient and WT mice, we saw no impact of PKR deficiency on macrophage activation in vitro or during the course of Mtb infection in vivo. In addition, although 129S1/SvImJ macrophage responses to IFN-γ were greater than those of C57BL/6J macrophages, PKR was not required to mediate the IFN-γ-dependent production of IL-10, RNI or TNF-α in either strain. Together the data cast doubt on PKR as a potential therapeutic target for tuberculosis.
Insights
Protein kinase R (PKR) deficiency does not impact macrophage activation or tuberculosis infection. Genetic background, not PKR, influences macrophage responses to interferon-γ (IFNγ).
Area of Science:
- Immunology
- Molecular Biology
- Microbiology
Background:
- Genetic deficiency of protein kinase R (PKR) in mice was previously reported to enhance macrophage activation and reduce Mycobacterium tuberculosis (Mtb) burden.
- PKR inhibitors were also shown to enhance interferon-γ (IFNγ)-dependent macrophage activation in vitro.
Purpose of the Study:
- To investigate the role of PKR in macrophage activation and Mtb infection.
- To evaluate a novel PKR inhibitor's effect on macrophage responses.
Main Methods:
- Treatment of wild-type (WT) and PKR-deficient macrophages with IFN-γ and a novel PKR inhibitor.
- Assessment of macrophage production of reactive nitrogen intermediates (RNI), tumor necrosis factor alpha (TNF-α), and interleukin 10 (IL-10).
- Comparison of macrophage activation and Mtb infection in genetically matched PKR-deficient and WT mice.
Main Results:
- The novel PKR inhibitor enhanced IFN-γ-dependent macrophage activation, increasing RNI and TNF-α, and decreasing IL-10 production.
- The PKR inhibitor had a comparable effect on both WT and PKR-deficient macrophages.
- No impact of PKR deficiency was observed on macrophage activation in vitro or Mtb infection in vivo in genetically matched mice.
- PKR was not required for IFN-γ-dependent production of IL-10, RNI, or TNF-α in either mouse strain.
Conclusions:
- The data cast doubt on PKR as a potential therapeutic target for tuberculosis.
- Genetic background significantly influences macrophage responses to IFN-γ, independent of PKR.
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