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Related Concept Videos

Eukaryotic Transcription Inhibitors01:52

Eukaryotic Transcription Inhibitors

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Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
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The Equilibrium Binding Constant and Binding Strength02:18

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The mode is one of the commonly used measures of a central tendency. It is defined as the most frequent value in a data set.
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Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
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Ventilatory Modes01:14

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Mechanical ventilators are life-saving devices that support or replace spontaneous breathing. They deliver breaths to patients through varying methods known as ventilator modes. Understanding these modes is critical for healthcare providers managing patients with respiratory failure.
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Ligand Binding and Linkage00:49

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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Conducting Multiple Imaging Modes with One Fluorescence Microscope
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Inhibitor Bound Dengue NS2B-NS3pro Reveals Multiple Dynamic Binding Modes.

Alan C Gibbs1, Ruth Steele1, Gaohua Liu2

  • 1Janssen Research and Development LLC , Welsh & McKean Roads , Spring House , Pennsylvania 19477 , United States.

Biochemistry
|February 16, 2018
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Summary
This summary is machine-generated.

Researchers discovered dengue virus NS2B-NS3pro inhibitors exhibit unexpected multibinding modes. Understanding these dynamics is crucial for developing effective dengue antiviral therapies and drugs.

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Area of Science:

  • Virology
  • Biochemistry
  • Drug Discovery

Background:

  • Dengue virus causes severe febrile illnesses, with no specific antiviral treatments available.
  • Viral RNA is translated into a polyprotein cleaved by the NS2B-NS3pro protease, a key drug target.
  • Substrate-based trifluoromethyl ketone peptides are a promising class of NS2B-NS3pro inhibitors.

Purpose of the Study:

  • To investigate the binding interactions of trifluoromethyl ketone peptide inhibitors with dengue NS2B-NS3pro.
  • To elucidate the molecular mechanisms underlying protease-inhibitor interactions for rational drug design.

Main Methods:

  • Utilized protein- and ligand-detected solution-state 19F and 1H NMR spectroscopy.
  • Analyzed the interactions between dengue NS2B-NS3pro and a representative trifluoromethyl ketone inhibitor.

Main Results:

  • Revealed an unanticipated multibinding mode of the inhibitor to the dengue NS2B-NS3pro.
  • Demonstrated the dynamic nature of both the covalently bound inhibitor and the protease structure.

Conclusions:

  • The dynamic nature of inhibitor-protease interactions must be considered for effective drug design.
  • Further research into these dynamics can guide the development of novel dengue antiviral therapies.