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A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants
Published on: January 21, 2020
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Despacito: the slow evolutionary changes in plant microRNAs
Patricia Baldrich1, Aleksandra Beric2, Blake C Meyers2
1Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132, USA.
Current Opinion in Plant Biology
|February 16, 2018
Summary
New microRNAs (miRNAs) in plants emerge either de novo from gene fragments or by expanding existing families. Their evolution is shaped by target acquisition and precursor processing constraints, impacting plant genome evolution.
Area of Science:
- Plant molecular biology
- Genomics
- Evolutionary biology
Background:
- MicroRNAs (miRNAs) are crucial regulators of gene expression in plants.
- While some miRNAs are conserved across land plants, most are lineage-specific.
- Understanding miRNA origins is key to plant genome evolution.
Purpose of the Study:
- To review hypothesized mechanisms for the emergence of new microRNAs in plants.
- To explore factors influencing microRNA evolution and divergence.
- To highlight the significance of microRNA regulatory networks in plant genomes.
Main Methods:
- Review of existing literature on microRNA biogenesis and evolution.
- Analysis of proposed models for microRNA origin (de novo emergence, family expansion).
- Examination of factors affecting microRNA evolution, including target site acquisition and precursor structure.
Main Results:
- Two primary models for microRNA origin: de novo emergence from gene fragments and expansion of existing families.
- MicroRNA evolution is dynamic, influenced by new target site acquisition and functional constraints.
- Precursor sequence conservation is vital for efficient microRNA biogenesis and processing.
Conclusions:
- MicroRNA emergence and divergence are complex processes critical for plant genome evolution.
- Studying microRNA evolution provides insights into the plasticity of gene regulatory networks.
- The mechanisms of microRNA origin contribute to the diversity of gene regulation in plants.
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