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Distinct expression of CDCA3, CDCA5, and CDCA8 leads to shorter relapse free survival in breast cancer patient
Nam Nhut Phan1,2, Chih-Yang Wang3, Kuan-Lun Li1
1Graduate Institute of Biotechnology, Chinese Culture University, Taipei, Taiwan.
Abstract:
Breast cancer is a dangerous disease that results in high mortality rates for cancer patients. Many methods have been developed for the treatment and prevention of this disease. Determining the expression patterns of certain target genes in specific subtypes of breast cancer is important for developing new therapies for breast cancer. In the present study, we performed a holistic approach to screening the mRNA expression of six members of the cell division cycle-associated gene family (CDCA) with a focus on breast cancer using the Oncomine and The Cancer Cell Line Encyclopedia (CCLE) databases. Furthermore, Gene Expression-Based Outcome for Breast Cancer Online (GOBO) was also used to deeply mine the expression of each CDCA gene in clinical breast cancer tissue and breast cancer cell lines. Finally, the mRNA expression of the CDCA genes as related to breast cancer patient survival were analyzed using a Kaplan-Meier plot. CDCA3, CDCA5, and CDCA8 mRNA expression levels were significantly higher than the control sample in both clinical tumor sample and cancer cell lines. These highly expressed genes in the tumors of breast cancer patients dramatically reduced patient survival. The interaction network of CDCA3, CDCA5, and CDCA8 with their co-expressed genes also revealed that CDCA3 expression was highly correlated with cell cycle related genes such as CCNB2, CDC20, CDKN3, and CCNB1. CDCA5 expression was correlated with BUB1 and TRIP13, while CDCA8 expression was correlated with BUB1 and CCNB1. Altogether, these findings suggested CDCA3, CDCA5, and CDCA8 could have a high potency as targeted breast cancer therapies.
Insights
High expression of cell division cycle-associated genes (CDCA3, CDCA5, CDCA8) in breast cancer correlates with poor patient survival. These genes show potential as novel therapeutic targets for breast cancer treatment.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Breast cancer poses a significant global health challenge with high mortality rates.
- Developing targeted therapies requires understanding gene expression in specific breast cancer subtypes.
- Cell division cycle-associated genes (CDCA) are implicated in cell proliferation and cancer development.
Purpose of the Study:
- To investigate the mRNA expression patterns of six CDCA genes in breast cancer.
- To correlate CDCA gene expression with clinical breast cancer samples and cell lines.
- To evaluate the association between CDCA gene expression and patient survival outcomes.
Main Methods:
- Utilized Oncomine, The Cancer Cell Line Encyclopedia (CCLE), and Gene Expression-Based Outcome for Breast Cancer Online (GOBO) databases.
- Analyzed mRNA expression levels of six CDCA genes in breast cancer tissues and cell lines.
- Performed Kaplan-Meier survival analysis to assess the impact of CDCA gene expression on patient prognosis.
Main Results:
- CDCA3, CDCA5, and CDCA8 mRNA levels were significantly elevated in breast cancer samples and cell lines compared to controls.
- Higher expression of CDCA3, CDCA5, and CDCA8 was associated with reduced patient survival.
- Identified strong correlations between CDCA3, CDCA5, CDCA8 and key cell cycle regulatory genes.
Conclusions:
- CDCA3, CDCA5, and CDCA8 are promising biomarkers for breast cancer prognosis.
- The elevated expression of these CDCA genes suggests their critical role in breast cancer progression.
- CDCA3, CDCA5, and CDCA8 represent potential targets for novel breast cancer therapies.
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