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Updated: Feb 14, 2026

Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
Published on: January 9, 2020
CYP2C19 variant mitigates Alzheimer disease pathophysiology in vivo and postmortem
Andréa L Benedet1, Lei Yu1, Aurélie Labbe1
1Translational Neuroimaging Laboratory (A.L.B., S.M., T.A.P., M.S., M.-S.K., P.R.-N.), and Alzheimer's Disease Research Unit (S.G., P.R.-N.), McGill University Research Centre for Studies in Aging, Montreal, Canada; CAPES Foundation (A.L.B.), Ministry of Education of Brazil, Brasília, Brazil; Rush Alzheimer's Disease Center (L.Y., D.A.B.), Rush University Medical Center, Chicago, IL; Department of Decision Sciences (A.L.), HEC Montreal, Montreal, Canada; Department of Epidemiology (A.L.), Biostatistics & Occupational Health, McGill University, Montreal, Canada; Department of Neurology and Neurosurgery (G.A.R., J.P., P.R.-N.), Douglas Hospital Research Centre (J.P., P.R.-N.), and Department of Psychiatry (J.P.), McGill University, Montreal, Canada; and Montreal Neurological Institute (G.A.R., P.R.-N.), Canada.
A specific CYP2C19 gene variant (rs4388808) is linked to reduced amyloid-beta (Aβ) pathology in Alzheimer's disease. This genetic variation appears to offer a protective effect, potentially improving cognition by lowering Aβ levels.
Area of Science:
- Neuroscience
- Genetics
- Biochemistry
Background:
- Alzheimer's disease (AD) is characterized by amyloid-beta (Aβ) pathology.
- Genetic factors, including cytochrome P450 (CYP) gene polymorphisms, are increasingly recognized for their role in AD pathogenesis.
- Understanding the genetic underpinnings of Aβ accumulation is crucial for developing targeted therapies.
Purpose of the Study:
- To investigate the association between CYP polymorphisms and Aβ pathology in individuals with Alzheimer's disease.
- To examine this relationship across the spectrum of clinical AD using both in vivo and postmortem data.
- To explore the impact of identified genetic associations on cognitive function.
Main Methods:
- A candidate-gene approach was employed, analyzing 28 single nucleotide polymorphisms across 5 CYP genes.
- Amyloid-beta (Aβ) load was measured using in vivo [18F]florbetapir PET SUVR in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort.
- Significant findings were validated using plasma and cerebrospinal fluid (CSF) Aβ levels, Aβ/p-tau ratios, and postmortem brain Aβ measurements.
Main Results:
- A significant association was found between the CYP2C19 gene variant rs4388808 and reduced Aβ PET SUVR (p=0.0006).
- Carriers of the minor allele (MA) of rs4388808 exhibited lower Aβ load in specific brain regions, higher CSF Aβ, and an elevated Aβ/p-tau ratio.
- Postmortem analysis confirmed lower Aβ load in MA carriers, who also demonstrated better global cognition mediated by Aβ levels.
Conclusions:
- The CYP2C19 polymorphism rs4388808 is associated with reduced Aβ pathology in Alzheimer's disease.
- The minor allele of rs4388808 demonstrates a protective effect against Aβ accumulation and may influence cognitive function.
- Further research is warranted to elucidate the precise biological mechanisms underlying this protective genetic association.
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