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Updated: Feb 14, 2026

Three Differential Expression Analysis Methods for RNA Sequencing: limma, EdgeR, DESeq2
Published on: September 18, 2021
Anti-differentiation non-coding RNA, ANCR, is differentially expressed in different types of brain tumors
Mahshid Malakootian1,2, Fatemeh Mirzadeh Azad1, Youssef Fouani1
1Department of Molecular Genetics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.
Abstract:
Long non-coding RNAs (lncRNAs) are important modulators of various cellular and molecular events, including cancer-associated pathways. The Anti-differentiation ncRNA (ANCR) is a key regulator of keratinocyte differentiation, where its expression is necessary to maintain epidermal progenitor's cells. Herein, we investigated the expression pattern of ANCR in the course of neural differentiation. Moreover, we used published RNAseq data and clinical samples to evaluate the alteration of ANCR expression in different cell types and brain tumors. Furthermore, we manipulated ANCR expression in glioma cell lines to clarify a potential functional role for ANCR in tumorigenesis. Our qRT-PCR results revealed a significant upregulation of ANCR in more malignant and less differentiated types of brain tumors (P = 0.03). This data was in accordance with down regulation of ANCR during neural differentiation. ANCR suppression caused an elevation in apoptosis rate, as well as a G1 cell cycle arrest in glioblastoma cell line. Altogether, our data demonstrated that ANCR may play a role in glioma genesis and that it could be considered as a potential diagnostic and therapeutic target to combat brain cancers.
Insights
The Anti-differentiation ncRNA (ANCR) is upregulated in malignant brain tumors and suppressed during neural differentiation. ANCR manipulation affects glioma cell apoptosis and cell cycle, suggesting its role in brain cancer development.
Area of Science:
- Molecular Biology
- Cancer Research
- Neuroscience
Background:
- Long non-coding RNAs (lncRNAs) regulate crucial cellular processes, including cancer pathways.
- The Anti-differentiation ncRNA (ANCR) is vital for keratinocyte differentiation and maintaining epidermal progenitor cells.
Purpose of the Study:
- To investigate the expression pattern of ANCR during neural differentiation.
- To evaluate ANCR expression alterations in various cell types and brain tumors using RNAseq data and clinical samples.
- To clarify ANCR's functional role in tumorigenesis by manipulating its expression in glioma cell lines.
Main Methods:
- Quantitative reverse transcription PCR (qRT-PCR) for ANCR expression analysis.
- Analysis of published RNAseq data and clinical brain tumor samples.
- ANCR expression manipulation in glioma cell lines.
Main Results:
- ANCR was significantly upregulated in more malignant and less differentiated brain tumors (P=0.03).
- ANCR expression decreased during neural differentiation.
- Suppression of ANCR in glioblastoma cells led to increased apoptosis and G1 cell cycle arrest.
Conclusions:
- ANCR plays a role in glioma genesis.
- ANCR may serve as a potential diagnostic and therapeutic target for brain cancers.
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