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Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
Published on: July 27, 2021
Mutations in the Basic Region of the Mason-Pfizer Monkey Virus Nucleocapsid Protein Affect Reverse Transcription,
Alžběta Dostálková1, Filip Kaufman1, Ivana Křížová1
1Department of Biotechnology, University of Chemistry and Technology Prague, Prague, Czech Republic.
Abstract:
In addition to specific RNA-binding zinc finger domains, the retroviral Gag polyprotein contains clusters of basic amino acid residues that are thought to support Gag-viral genomic RNA (gRNA) interactions. One of these clusters is the basic K16NK18EK20 region, located upstream of the first zinc finger of the Mason-Pfizer monkey virus (M-PMV) nucleocapsid (NC) protein. To investigate the role of this basic region in the M-PMV life cycle, we used a combination of in vivo and in vitro methods to study a series of mutants in which the overall charge of this region was more positive (RNRER), more negative (AEAEA), or neutral (AAAAA). The mutations markedly affected gRNA incorporation and the onset of reverse transcription. The introduction of a more negative charge (AEAEA) significantly reduced the incorporation of M-PMV gRNA into nascent particles. Moreover, the assembly of immature particles of the AEAEA Gag mutant was relocated from the perinuclear region to the plasma membrane. In contrast, an enhancement of the basicity of this region of M-PMV NC (RNRER) caused a substantially more efficient incorporation of gRNA, subsequently resulting in an increase in M-PMV RNRER infectivity. Nevertheless, despite the larger amount of gRNA packaged by the RNRER mutant, the onset of reverse transcription was delayed in comparison to that of the wild type. Our data clearly show the requirement for certain positively charged amino acid residues upstream of the first zinc finger for proper gRNA incorporation, assembly of immature particles, and proceeding of reverse transcription.IMPORTANCE We identified a short sequence within the Gag polyprotein that, together with the zinc finger domains and the previously identified RKK motif, contributes to the packaging of genomic RNA (gRNA) of Mason-Pfizer monkey virus (M-PMV). Importantly, in addition to gRNA incorporation, this basic region (KNKEK) at the N terminus of the nucleocapsid protein is crucial for the onset of reverse transcription. Mutations that change the positive charge of the region to a negative one significantly reduced specific gRNA packaging. The assembly of immature particles of this mutant was reoriented from the perinuclear region to the plasma membrane. On the contrary, an enhancement of the basic character of this region increased both the efficiency of gRNA packaging and the infectivity of the virus. However, the onset of reverse transcription was delayed even in this mutant. In summary, the basic region in M-PMV Gag plays a key role in the packaging of genomic RNA and, consequently, in assembly and reverse transcription.
Insights
A basic amino acid region in Mason-Pfizer monkey virus (M-PMV) Gag is essential for genomic RNA (gRNA) packaging and viral assembly. Altering this region impacts gRNA incorporation, particle assembly, and reverse transcription, influencing M-PMV infectivity.
Area of Science:
- Virology
- Molecular Biology
- Retroviral Research
Background:
- Retroviral Gag polyproteins contain basic amino acid clusters crucial for genomic RNA (gRNA) interactions.
- The KNK EK region upstream of the first zinc finger in Mason-Pfizer monkey virus (M-PMV) nucleocapsid (NC) protein is a key interaction site.
- Understanding this region's role is vital for deciphering M-PMV replication and assembly dynamics.
Purpose of the Study:
- To investigate the function of the basic KNK EK region in the M-PMV life cycle.
- To determine how modifications to the charge of this region affect gRNA incorporation, particle assembly, and reverse transcription.
- To elucidate the role of this basic region in M-PMV infectivity.
Main Methods:
- Utilized a series of M-PMV Gag mutants with altered charge in the KNK EK region (more positive, more negative, neutral).
- Employed a combination of in vivo and in vitro methods to analyze gRNA incorporation and reverse transcription.
- Observed the assembly site of immature viral particles using microscopy.
Main Results:
- Mutations significantly affected gRNA incorporation and the initiation of reverse transcription.
- A more negative charge (AEAEA mutant) reduced gRNA incorporation and shifted particle assembly from the perinuclear region to the plasma membrane.
- Enhanced basicity (RNRER mutant) increased gRNA incorporation and M-PMV infectivity, but delayed reverse transcription onset.
Conclusions:
- Positively charged amino acid residues upstream of the zinc finger are required for proper gRNA packaging, immature particle assembly, and efficient reverse transcription.
- The basic KNK EK region is critical for specific gRNA packaging, influencing M-PMV assembly and infectivity.
- While essential for gRNA packaging and infectivity, this region's precise role in the timing of reverse transcription requires further investigation.
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