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CCFS: A cooperating coevolution technique for large scale feature selection on microarray datasets.

Mohammad K Ebrahimpour1, Hossein Nezamabadi-Pour2, Mahdi Eftekhari1

  • 1Computer Engineering Department, Shahid Bahonar University of Kerman, Kerman, Iran.

Computational Biology and Chemistry
|March 2, 2018
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Summary
This summary is machine-generated.

A new feature selection method, CCFS, addresses challenges in high-dimensional microarray data. This approach improves accuracy, sensitivity, and specificity compared to existing algorithms.

Keywords:
Cooperating coevolving feature selectionDivide and conquered algorithmsMeta-heuristicsMicroarray datasets

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Area of Science:

  • Bioinformatics
  • Machine Learning
  • Computational Biology

Background:

  • Microarray datasets present challenges due to high dimensionality and small sample sizes.
  • Effective feature selection is crucial for machine learning on such data.
  • Existing methods struggle with the complexity of these datasets.

Purpose of the Study:

  • To propose a novel feature selection method called CCFS.
  • To address the limitations of current feature selection techniques for high-dimensional microarray data.
  • To enhance the performance of machine learning models using selected features.

Main Methods:

  • CCFS employs a global search strategy using divide and conquer principles.
  • The algorithm randomly divides features and uses cooperative co-evolution.
  • A binary gravitational search algorithm optimizes feature selection with a filter criterion.

Main Results:

  • Experiments on seven binary microarray datasets demonstrate CCFS's effectiveness.
  • CCFS performance was compared against nine state-of-the-art algorithms.
  • Statistical analysis confirmed CCFS significantly improved accuracy, sensitivity, specificity, and reduced feature count.

Conclusions:

  • The proposed CCFS method offers a significant advancement in feature selection for high-dimensional microarray data.
  • CCFS outperforms existing methods in key performance metrics.
  • This approach provides a more effective solution for analyzing complex biological datasets.