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Updated: Feb 13, 2026

Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER
Published on: June 23, 2012
Advances in the Genetics of Hypertension: The Effect of Rare Variants
Alessia Russo1,2, Cornelia Di Gaetano3,4, Giovanni Cugliari5,6
1Department of Medical Sciences, University of Turin, 10126 Turin, Italy. alessia.russo@hugef.org.
Insights
Essential hypertension is a complex trait influenced by genetics and environment. Researchers are exploring rare genetic variants, beyond common ones found in Genome-Wide Association Studies, to better understand hypertension causes and improve patient care.
Area of Science:
- Genetics
- Cardiovascular Disease Research
- Genomics
Background:
- Hypertension remains a significant global health issue, causing millions of deaths annually.
- Essential hypertension is a multifactorial condition with a heritability of 30-50%, influenced by both genetic and environmental factors.
- Genome-Wide Association Studies (GWAS) have identified common variants but explain only a small fraction of hypertension's genetic variance.
Purpose of the Study:
- To review advances in detecting novel rare genetic variants associated with hypertension.
- To discuss emerging statistical methods for analyzing rare variants in complex diseases.
- To highlight the importance of functional studies and consortia for validating rare variants and their clinical relevance.
Main Methods:
- Review of current literature on rare variant detection in hypertension.
- Discussion of Next-Generation Sequencing and exome chip technologies.
- Analysis of recent statistical approaches for rare variant association testing.
Main Results:
- Genome-Wide Association Studies (GWAS) have identified common variants contributing minimally (2-3%) to hypertension's genetic variance.
- Rare variants, undetectable by GWAS, are increasingly discovered using advanced sequencing technologies.
- New statistical tests are being developed to effectively analyze the impact of these rare variants.
Conclusions:
- Rare genetic variants represent a significant portion of the missing heritability in hypertension.
- Further research, including large-scale replication and functional studies, is crucial for understanding the role of rare variants.
- Identifying novel genes and pathways through rare variant analysis may lead to improved patient stratification and personalized antihypertensive treatments.
Abstract:
Worldwide, hypertension still represents a serious health burden with nine million people dying as a consequence of hypertension-related complications. Essential hypertension is a complex trait supported by multifactorial genetic inheritance together with environmental factors. The heritability of blood pressure (BP) is estimated to be 30-50%. A great effort was made to find genetic variants affecting BP levels through Genome-Wide Association Studies (GWAS). This approach relies on the "common disease-common variant" hypothesis and led to the identification of multiple genetic variants which explain, in aggregate, only 2-3% of the genetic variance of hypertension. Part of the missing genetic information could be caused by variants too rare to be detected by GWAS. The use of exome chips and Next-Generation Sequencing facilitated the discovery of causative variants. Here, we report the advances in the detection of novel rare variants, genes, and/or pathways through the most promising approaches, and the recent statistical tests that have emerged to handle rare variants. We also discuss the need to further support rare novel variants with replication studies within larger consortia and with deeper functional studies to better understand how new genes might improve patient care and the stratification of the response to antihypertensive treatments.
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Hypertension II: Pathophysiology
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