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The RNA-binding Protein MEX3B Mediates Resistance to Cancer Immunotherapy by Downregulating HLA-A Expression
Lu Huang1, Shruti Malu1, Jodi A McKenzie1
1Department of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Abstract:
Purpose: Cancer immunotherapy has shown promising clinical outcomes in many patients. However, some patients still fail to respond, and new strategies are needed to overcome resistance. The purpose of this study was to identify novel genes and understand the mechanisms that confer resistance to cancer immunotherapy.Experimental Design: To identify genes mediating resistance to T-cell killing, we performed an open reading frame (ORF) screen of a kinome library to study whether overexpression of a gene in patient-derived melanoma cells could inhibit their susceptibility to killing by autologous tumor-infiltrating lymphocytes (TIL).Results: The RNA-binding protein MEX3B was identified as a top candidate that decreased the susceptibility of melanoma cells to killing by TILs. Further analyses of anti-PD-1-treated melanoma patient tumor samples suggested that higher MEX3B expression is associated with resistance to PD-1 blockade. In addition, significantly decreased levels of IFNγ were secreted from TILs incubated with MEX3B-overexpressing tumor cells. Interestingly, this phenotype was rescued upon overexpression of exogenous HLA-A2. Consistent with this, we observed decreased HLA-A expression in MEX3B-overexpressing tumor cells. Finally, luciferase reporter assays and RNA-binding protein immunoprecipitation assays suggest that this is due to MEX3B binding to the 3' untranslated region (UTR) of HLA-A to destabilize the mRNA.Conclusions: MEX3B mediates resistance to cancer immunotherapy by binding to the 3' UTR of HLA-A to destabilize the HLA-A mRNA and thus downregulate HLA-A expression on the surface of tumor cells, thereby making the tumor cells unable to be recognized and killed by T cells. Clin Cancer Res; 24(14); 3366-76. ©2018 AACRSee related commentary by Kalbasi and Ribas, p. 3239.
Insights
MEX3B protein confers resistance to cancer immunotherapy by reducing tumor cell recognition by T cells. It achieves this by decreasing HLA-A expression, a key molecule for T cell-mediated killing.
Area of Science:
- Immunology
- Oncology
- Molecular Biology
Background:
- Cancer immunotherapy offers clinical benefits but faces resistance in some patients.
- Novel strategies are needed to overcome immunotherapy resistance.
- Understanding resistance mechanisms is crucial for improving treatment efficacy.
Purpose of the Study:
- Identify genes conferring resistance to cancer immunotherapy.
- Elucidate the mechanisms by which these genes mediate resistance.
- Investigate the role of RNA-binding proteins in immunotherapy resistance.
Main Methods:
- Performed an open reading frame (ORF) screen using a kinome library to identify resistance genes.
- Utilized patient-derived melanoma cells and autologous tumor-infiltrating lymphocytes (TILs).
- Analyzed patient tumor samples treated with anti-PD-1 therapy and performed molecular assays (luciferase, RIP).
Main Results:
- Identified MEX3B, an RNA-binding protein, as a mediator of resistance to TIL-mediated killing.
- Found higher MEX3B expression associated with resistance to PD-1 blockade in melanoma patients.
- Demonstrated that MEX3B downregulates HLA-A expression by destabilizing HLA-A mRNA, impairing T cell recognition.
Conclusions:
- MEX3B confers resistance to cancer immunotherapy by downregulating surface HLA-A expression.
- This downregulation occurs through MEX3B binding to the 3' UTR of HLA-A mRNA, leading to its destabilization.
- Targeting MEX3B may represent a strategy to enhance the effectiveness of cancer immunotherapy.
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