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Targeted sequencing analysis of ACVR2A gene identifies novel risk variants associated with preeclampsia
Andrey S Glotov1,2, Sergey V Kazakov3,4, Elena S Vashukova1,2
1a Laboratory of Prenatal Diagnostics of Hereditary Diseases , FSBSI "The Research Institute of Obstetrics, Gynecology and Reproductology named after D.O. Ott" , St. Petersburg , Russia.
Insights
Genetic variants in the ACVR2A gene are linked to preeclampsia (PE), a common pregnancy complication. Identifying these ACVR2A gene markers could aid in early PE diagnosis and prevention strategies.
Area of Science:
- Genetics
- Obstetrics
- Molecular Biology
Background:
- Preeclampsia (PE) is a leading cause of maternal and fetal mortality.
- Early PE diagnosis is crucial for timely intervention and improved outcomes.
- The association between ACVR2A gene polymorphism and PE requires further investigation into its pathogenetic role.
Purpose of the Study:
- To investigate the association between ACVR2A gene variants and preeclampsia.
- To identify potential genetic markers for PE prediction and diagnosis.
Main Methods:
- Targeted next-generation sequencing (NGS) of the ACVR2A gene.
- Genetic analysis of PE patients and a control group.
- Bioinformatics analysis using Polyphen2, SIFT, and SnpSift; score analysis for marker selection.
Main Results:
- Identified two substitutions (rs145399059, rs17692648) and one insertion (insAA) associated with PE.
- Detected a potential protective variant (rs17742573) against preeclampsia.
- Score analysis highlighted specific ACVR2A variants linked to PE.
Conclusions:
- Certain ACVR2A gene variants show association with preeclampsia.
- Further research is needed to elucidate the precise role of ACVR2A in PE pathogenesis.
- These findings may contribute to understanding PE's genetic underpinnings.
Abstract:
Background: Preeclampsia (PE) is the most common complication of pregnancy that remains to be a major cause of maternal and fetal mortality. Prediction and early diagnosis of PE would allow for timely initiation of preventive therapy. According to recent studies of ACVR2A gene polymorphism is associated with PE, but it is still unclear whether these findings reflect specific pathogenetic mechanisms of this disease. Methods: We performed targeted next-generation sequencing (NGS) sequencing of ACVR2A gene by means of Ion Torrent Personal Genome machine (PGM) Sequencer. A genetic analysis of patients with PE and control group was performed. Bioinformatics analysis using Polyphen2 (Boston, MA), SIFT (La Jolla, CA), and SnpSift software were used. To select genetic markers in PE patients two additive models and score analysis were applied. Results: Based on the score analysis, we detected two substitutions (rs145399059 and rs17692648) and one insertion insAA at position 148642724 that were associated with PE in our cohorts. We also detected a variant rs17742573 that can be considered as protective against preeclampsia. Conclusions: Our data suggest that some variants in ACVR2A gene are associated with PE. But more studies are required to reveal the role of ACVR2A gene in the pathogenesis of this disease during pregnancy.
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