Identification of COL4A1 as a potential gene conferring trastuzumab resistance in gastric cancer based on bioinformatics analysis
Ru Huang1, Wenchao Gu1, Bin Sun2
1Department of Heart Failure, Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, P.R. China.
Abstract:
Trastuzumab, the first targeted antibody against human epidermal growth factor receptor 2 (HER2), has been used to treat gastric cancer patients with HER2 overexpression. However, trastuzumab resistance often occurs following an initial period of benefits, and the underlying mechanisms remain largely unclear. The present study revealed that collagen type IV α1 chain (COL4A1), whose expression is upregulated in gastric cancer tissues and trastuzumab‑resistant gastric cancer cells, may potentially confer trastuzumab resistance in gastric cancer. By performing bioinformatics analysis of 2 microarray datasets, the present study initially identified COL4A1, overexpressed in gastric cancer tissues and trastuzumab‑resistant gastric cancer cells, as a potential candidate for inducing trastuzumab resistance. The drug resistance function of COL4A1 in gastric cancer was then validated by performing protein/gene interactions and biological process annotation analyses, and further validated by analyzing the functionality of microRNAs that target COL4A1 mRNA. Collectively, these data indicated that COL4A1 may confer trastuzumab resistance in gastric cancer.
Insights
Collagen type IV α1 chain (COL4A1) may cause trastuzumab resistance in gastric cancer. This study identified COL4A1 as a potential driver of resistance in HER2-overexpressing gastric cancer patients.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Trastuzumab is a targeted therapy for HER2-overexpressing gastric cancer.
- Trastuzumab resistance is a significant clinical challenge, with mechanisms often unclear.
Purpose of the Study:
- To investigate the role of collagen type IV α1 chain (COL4A1) in trastuzumab resistance in gastric cancer.
- To identify potential molecular mechanisms underlying trastuzumab resistance.
Main Methods:
- Bioinformatic analysis of two microarray datasets.
- Protein/gene interaction and biological process annotation analyses.
- Functional analysis of microRNAs targeting COL4A1 mRNA.
Main Results:
- COL4A1 expression is upregulated in gastric cancer tissues and trastuzumab-resistant cells.
- COL4A1 was identified as a potential inducer of trastuzumab resistance.
- Validation confirmed COL4A1's role in conferring drug resistance.
Conclusions:
- COL4A1 is a potential therapeutic target for overcoming trastuzumab resistance in gastric cancer.
- Understanding COL4A1's function may lead to novel treatment strategies for resistant gastric cancer.
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