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Published on: May 26, 2011
Cloning of the bovine 215-kDa cation-independent mannose 6-phosphate receptor
Abstract:
Four overlapping cDNA clones encoding a partial sequence of the cation-independent 215-kDa mannose 6-phosphate receptor have been identified by screening a fetal calf liver cDNA library with oligonucleotide probes. RNA hybridization analysis showed that the length of the mRNA is approximately 9.5 kilobases. Sequence analysis demonstrated that the clones consist of 4647 contiguous nucleotides and contain an open reading frame coding for a polypeptide of 1461 amino acids, which we estimate represents greater than 75% of the primary structure of the receptor. The deduced amino acid sequence indicates that the receptor has a carboxyl-terminal cytoplasmic domain of 163 amino acids that is rich in acidic residues, a 23-amino acid transmembrane segment, and an extracellular domain containing at least eight homologous repeats of approximately 145 amino acids. One of the repeats contains an additional 43-residue segment that is similar to the type II repeat of fibronectin. Each repeat contains a highly conserved 13-amino acid unit bordered by cysteine residues that may be functionally important.
Insights
Researchers identified partial cDNA sequences for the cation-independent mannose 6-phosphate receptor. This key protein is involved in cellular transport and has a complex structure with homologous repeats.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The cation-independent mannose 6-phosphate receptor (CI-MPR) is crucial for lysosomal enzyme targeting.
- Understanding the CI-MPR's structure is vital for elucidating its function in cellular trafficking.
Purpose of the Study:
- To identify and characterize cDNA clones encoding a partial sequence of the 215-kDa CI-MPR.
- To analyze the deduced amino acid sequence and structural features of the receptor.
Main Methods:
- Screening a fetal calf liver cDNA library using oligonucleotide probes.
- RNA hybridization analysis to determine mRNA length.
- DNA sequencing to analyze cDNA clones and deduce the amino acid sequence.
Main Results:
- Four overlapping cDNA clones encoding a partial CI-MPR sequence were identified.
- The mRNA is approximately 9.5 kilobases, and the sequenced region spans 4647 nucleotides.
- The deduced polypeptide contains a cytoplasmic domain, a transmembrane segment, and an extracellular domain with eight homologous repeats, including a fibronectin-like segment.
Conclusions:
- The study provides significant insights into the structural organization of the CI-MPR.
- The identified repeats and conserved cysteine-bordered units suggest potential functional importance in receptor activity.
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