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Reconstituting the History of Cronobacter Evolution Driven by Differentiated CRISPR Activity
Haiyan Zeng1, Jumei Zhang1, Qingping Wu2
1Guangdong Institute of Microbiology, State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbiology Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangzhou, China.
The CRISPR-Cas system is crucial for Cronobacter evolution, maintaining genome stability. Differentiated CRISPR activity drives Cronobacter divergence and speciation, impacting adaptation and pathogenicity.
Area of Science:
- Microbiology
- Genomics
- Evolutionary Biology
Background:
- Cronobacter are foodborne pathogens, with CRISPR-Cas systems playing a role in their evolution.
- The specific impact of CRISPR-Cas on Cronobacter evolution is not well understood.
Purpose of the Study:
- Investigate the influence of the CRISPR-Cas system on Cronobacter evolution.
- Determine the role of CRISPR-Cas in genome homeostasis, adaptation, and speciation.
Main Methods:
- Whole-genome sequencing of 137 new Cronobacter strains.
- Analysis of CRISPR-Cas system presence and activity in 240 Cronobacter strains.
- Comparative genomic analysis of CRISPR-Cas subtypes and spacer content.
Main Results:
- 90.6% of prevalent Cronobacter species possess intact CRISPR-Cas systems.
- Rare species show lower frequencies of intact CRISPR-Cas systems.
- Subtype I-E was retained, while I-F degenerated or was lost.
- Higher CRISPR activity observed in plant-associated C. dublinensis compared to virulence-related species.
- Limited spacer similarity suggests high rates of CRISPR array turnover.
Conclusions:
- A single CRISPR-Cas system is vital for Cronobacter genome homeostasis.
- Dual CRISPR-Cas systems may hinder beneficial DNA acquisition for adaptation and pathogenicity.
- Differentiated CRISPR activity contributes to Cronobacter genetic diversity, divergence, and speciation.
- CRISPR-Cas systems influence bacterial evolution beyond adaptive immunity, linking to adaptation and speciation.
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