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Identification of small-molecule inhibitors of USP2a
Marcin D Tomala1, Katarzyna Magiera-Mularz1, Katarzyna Kubica1
1Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Krakow, Poland.
Abstract:
USP2a is a deubiquitinating protease that rescues its target proteins from destruction by the proteasome by reversing the process of protein ubiquitination. USP2a shows oncogenic properties in vivo and has been found to be a specific activator of cyclin D1. Many types of cancers are addicted to cyclin D1 expression. Targeting USP2a is a promising strategy for cancer therapy but little progress has been made in the field of inhibition of USP2a. Using NMR-based fragment screening and biophysical binding assays, we have discovered small molecules that bind to USP2a. Iterations of fragment combination and structure-driven design identified two 5-(2-thienyl)-3-isoxazoles as the inhibitors of the USP2a-ubiquitin protein-protein interaction. The affinity of these molecules for the catalytic domain of USP2a parallels their ability to interfere with USP2a binding to ubiquitin in vitro. Altogether, our results establish the 5-(2-thienyl)-3-isoxazole pharmacophore as an attractive starting point for lead optimization.
Insights
Researchers discovered novel small molecules that inhibit USP2a, a protein linked to cancer growth by stabilizing cyclin D1. This finding offers a promising new strategy for developing cancer therapies targeting USP2a.
Area of Science:
- Biochemistry
- Molecular Biology
- Medicinal Chemistry
Background:
- Ubiquitin-specific protease 2a (USP2a) deubiquitinating enzyme promotes cancer by stabilizing oncogenic proteins like cyclin D1.
- Targeting USP2a is a potential cancer therapy strategy, but effective inhibitors are lacking.
Purpose of the Study:
- To discover and develop novel small molecule inhibitors of USP2a.
- To identify a new pharmacophore for USP2a-targeted cancer therapeutics.
Main Methods:
- Utilized NMR-based fragment screening to identify USP2a binders.
- Employed biophysical binding assays to characterize inhibitor interactions.
- Applied structure-driven design and fragment combination for optimization.
Main Results:
- Identified two 5-(2-thienyl)-3-isoxazole compounds as inhibitors of USP2a.
- Demonstrated that these inhibitors block the USP2a-ubiquitin protein-protein interaction.
- Confirmed that inhibitor affinity correlates with functional inhibition of USP2a.
Conclusions:
- The 5-(2-thienyl)-3-isoxazole scaffold is a promising starting point for developing USP2a inhibitors.
- These findings provide a foundation for optimizing lead compounds for cancer therapy.
- This study advances the development of novel strategies to target USP2a in cancer treatment.
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