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Updated: Feb 13, 2026

Orthotopic Mouse Model of Colorectal Cancer
Published on: December 4, 2007
Clinical Aspects of Microsatellite Instability Testing in Colorectal Cancer
Mehrdad Zeinalian1, Morteza Hashemzadeh-Chaleshtori2, Rasoul Salehi1
1Department of Genetics and Molecular Biology, School of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran.
Abstract:
Microsatellite instability (MSI) is a molecular hallmark for some colorectal cancers (CRCs) in which short tandem repeats are prone to mutations along with DNA sequences. It is due to DNA-mismatch-repair system deficiency because of a germline/somatic mutation in mismatch-repair (MMR) genes. The germline mutations lead to Lynch syndrome (LS) while epigenetic gene silencing results in sporadic CRC tumors. We discuss in our paper the most important clinical aspects of MSI testing in CRCs. We reviewed the most reliable relevant studies and clinical trials according to their high-quality methods, particularly within two recent decades. MSI testing is used to classify CRC tumors as MSI-high (MSI-H), MSI-low, and microsatellite stable tumors. MSI-H or MMR deficient tumors have shown the best prognosis among all CRCs, so MSI testing is considered as a good prognostic marker. Moreover, it is used to identify LS among familial CRC patients. There is a diagnostic mutation in BRAF gene (V600E) by which sporadic CRCs could be distinguished from LS associated CRCs, due to its concordance with sporadic CRCs not LS. Although, some previous studies had demonstrated a predictive role for MSI testing in chemotherapy process, emerging some controversial findings in recent studies has not convinced many authors to recommend it as a routine examination to evaluate therapeutic response. Though emerging new molecular findings have opened novel windows to develop clinical management of CRC, MSI testing has remained as an excellent prognostic and diagnostic tool for CRC tumors.
Insights
Microsatellite instability (MSI) testing is crucial for classifying colorectal cancer (CRC) tumors. MSI-high or mismatch-repair deficient tumors indicate a better prognosis and aid in identifying Lynch syndrome.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Microsatellite instability (MSI) is a key molecular feature in some colorectal cancers (CRCs), arising from DNA mismatch repair (MMR) deficiency.
- Germline mutations in MMR genes cause Lynch syndrome (LS), while epigenetic silencing leads to sporadic CRC tumors.
Purpose of the Study:
- To review the clinical significance of MSI testing in CRC diagnosis and prognosis.
- To evaluate MSI testing as a prognostic marker and its role in identifying Lynch syndrome.
Main Methods:
- Review of high-quality studies and clinical trials on MSI testing in CRC over the past two decades.
- Analysis of MSI testing's utility in classifying tumors (MSI-high, MSI-low, microsatellite stable) and distinguishing sporadic from LS-associated CRCs.
Main Results:
- MSI testing classifies CRC tumors and identifies MSI-high/MMR-deficient tumors as having the best prognosis.
- MSI testing is valuable for identifying Lynch syndrome in familial CRC patients.
- The BRAF V600E mutation helps differentiate sporadic CRCs from LS-associated CRCs.
Conclusions:
- MSI testing is an excellent prognostic and diagnostic tool for colorectal cancer.
- While its predictive role in chemotherapy response remains debated, MSI testing is vital for CRC management.
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