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Updated: Feb 13, 2026

High-throughput Quantitative Real-time RT-PCR Assay for Determining Expression Profiles of Types I and III Interferon Subtypes
Published on: March 24, 2015
Impact of Interferon Lambda 4 Genotype on Interferon-Stimulated Gene Expression During Direct-Acting Antiviral
Narayan Ramamurthy1, Emanuele Marchi1, M Azim Ansari1,2,3
1Peter Medawar Building for Pathogen Research and Translational Gastroeneterology Unit, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Insights
Hepatitis C virus (HCV) genotype 3 patients with cirrhosis are harder to treat. Interferon lambda 4 (IFNL4) CC genotype is linked to treatment success and dynamic interferon-stimulated gene (ISG) changes during therapy.
Area of Science:
- Hepatology
- Virology
- Genetics
Background:
- Direct-acting antivirals (DAAs) offer high cure rates for Hepatitis C Virus (HCV).
- Certain patient groups, including those with cirrhosis or HCV genotype 3, present treatment challenges.
- The BOSON trial indicated a ~50% sustained virological response (SVR) rate for genotype 3 patients with cirrhosis on a 16-week DAA regimen.
Purpose of the Study:
- To investigate host genetic factors influencing treatment outcomes in HCV genotype 3 patients with cirrhosis.
- To explore the relationship between interferon lambda 4 (IFNL4) genotype and sustained virological response (SVR).
- To analyze the dynamic changes in interferon-stimulated gene (ISG) expression during DAA therapy in relation to host genotype.
Main Methods:
- Analysis of data from the BOSON trial, focusing on patients with HCV genotype 3 and cirrhosis.
- Genotyping for IFNL4 polymorphisms (CC vs. non-CC).
- Measurement of ISG signature in peripheral blood and liver tissue at baseline and during DAA treatment.
Main Results:
- The IFNL4 CC genotype was significantly associated with higher SVR rates in cirrhotic patients with HCV genotype 3.
- Patients with the IFNL4 CC genotype exhibited a lower baseline ISG signature.
- A dynamic increase in ISG expression was observed in CC genotype patients between weeks 4 and 16 of DAA therapy, unlike non-CC patients.
Conclusions:
- Host IFNL4 genotype plays a crucial role in modulating the host response to DAA therapy in HCV.
- The findings highlight a dynamic interplay between host genetic factors and virologic response during HCV treatment.
- These insights may also be relevant for understanding naturally acquired HCV infections and developing personalized treatment strategies.
Abstract:
New directly acting antivirals (DAAs) provide very high cure rates in most patients infected by hepatitis C virus (HCV). However, some patient groups have been relatively harder to treat, including those with cirrhosis or infected with HCV genotype 3. In the recent BOSON trial, genotype 3, patients with cirrhosis receiving a 16-week course of sofosbuvir and ribavirin had a sustained virological response (SVR) rate of around 50%. In patients with cirrhosis, interferon lambda 4 (IFNL4) CC genotype was significantly associated with SVR. This genotype was also associated with a lower interferon-stimulated gene (ISG) signature in peripheral blood and in liver at baseline. Unexpectedly, patients with the CC genotype showed a dynamic increase in ISG expression between weeks 4 and 16 of DAA therapy, whereas the reverse was true for non-CC patients. Conclusion: These data provide an important dynamic link between host genotype and phenotype in HCV therapy also potentially relevant to naturally acquired infection. (Hepatology 2018; 00:000-000).
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