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3-D Cell Culture System for Studying Invasion and Evaluating Therapeutics in Bladder Cancer
Published on: September 13, 2018
Comprehensive genomic profiling of neuroendocrine bladder cancer pinpoints molecular origin and potential
Peiye Shen1,2, Ying Jing1, Ruiyun Zhang3
1State Key Laboratory of Oncogenes and Related Genes, Shanghai Cancer Institute, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Abstract:
Neuroendocrine bladder cancer is a relatively rare but often lethal malignancy, with cell of origin, oncogenomic architecture and standard treatment poorly defined. Here we performed comprehensive whole-genome and transcriptome sequencing on a unique cohort of genitourinary neuroendocrine neoplasms, mainly small cell carcinomas of the urinary bladder. The mutational landscape and signatures of neuroendocrine bladder cancer strikingly resembled those in conventional urothelial carcinoma, along with typically mixed histologies, supporting a common cellular origin. We identified pervasive age-related and APOBEC-mediated mutagenesis patterns, and one patient displayed a somatic fingerprint attributable to aristolochic acid exposure, an established etiology of urothelial cell carcinoma. Deep RNA sequencing revealed dysregulated tumorigenic pathways and novel fusion transcripts, including a targetable in-frame PVT1-ERBB2 variant associated with aberrant expression of ERBB2 gene (encoding HER2 receptor). Furthermore, we provided preliminary evidence that combined TP53 and RB1 depletion favored lineage switching from oncogene-addicted urothelial cancer cells to neuroendocrine-like tumor cells, and resulted in decreased response to targeted agents. Together, these data present the first high-resolution genomic portrait of neuroendocrine bladder cancer, which holds important implications for the biological understanding and rational treatment of this deadly disease.
Insights
Neuroendocrine bladder cancer shares genetic similarities with urothelial carcinoma, suggesting a common origin. Genomic analysis revealed targetable mutations and potential mechanisms driving this rare, lethal malignancy.
Area of Science:
- Oncology
- Genomics
- Urology
Background:
- Neuroendocrine bladder cancer is a rare, aggressive malignancy with poorly understood origins and treatment.
- Existing knowledge on its oncogenomic landscape and cellular origins is limited.
Purpose of the Study:
- To perform comprehensive genomic and transcriptomic sequencing on neuroendocrine bladder neoplasms.
- To elucidate the mutational landscape, cellular origin, and potential therapeutic targets in neuroendocrine bladder cancer.
Main Methods:
- Whole-genome and transcriptome sequencing of genitourinary neuroendocrine neoplasms, primarily small cell bladder carcinomas.
- Analysis of mutational landscape, signatures, fusion transcripts, and gene expression.
- Investigating the role of TP53 and RB1 depletion in lineage switching.
Main Results:
- Neuroendocrine bladder cancer exhibits mutational patterns similar to urothelial carcinoma, supporting a common cell of origin.
- Identified age-related and APOBEC-mediated mutagenesis, and aristolochic acid exposure signature.
- Discovered novel fusion transcripts, including a targetable PVT1-ERBB2 variant impacting HER2 expression.
- TP53 and RB1 depletion promoted lineage switching and reduced sensitivity to targeted therapies.
Conclusions:
- This study provides the first high-resolution genomic portrait of neuroendocrine bladder cancer.
- Findings suggest a common origin with urothelial carcinoma and reveal potential therapeutic vulnerabilities.
- Understanding the genomic underpinnings is crucial for developing effective treatments for this deadly disease.
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