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Published on: February 7, 2025
The TMEM127 human tumor suppressor is a component of the mTORC1 lysosomal nutrient-sensing complex
Yilun Deng1,2, Yuejuan Qin1, Subramanya Srikantan1
1Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.
Abstract:
The TMEM127 tumor suppressor gene encodes a transmembrane protein of unknown function mutated in pheochromocytomas and, rarely, in renal cancers. Tumors with inactivating TMEM127 mutations have increased mTORC1 signaling by undefined mechanisms. Here we report that TMEM127 interacts with the lysosome-anchored complex comprised of Rag GTPases, the LAMTOR pentamer (or 'ragulator') and vATPase, which controls amino acid-mediated mTORC1 activation. We found that under nutrient-rich conditions TMEM127 expression reduces mTORC1 recruitment to Rags. In addition, TMEM127 interacts with LAMTOR in an amino acid-dependent manner and decreases the LAMTOR1-vATPase association, while TMEM127-vATPase binding requires intact lysosomal acidification but is amino acid independent. Conversely, both murine and human cells lacking TMEM127 accumulate LAMTOR proteins in the lysosome. Consistent with these findings, pheochromocytomas with TMEM127 mutations have increased levels of LAMTOR proteins. These results suggest that TMEM127 interactions with ragulator and vATPase at the lysosome contribute to restrain mTORC1 signaling in response to amino acids, thus explaining the increased mTORC1 activation seen in TMEM127-deficient tumors.
Insights
The TMEM127 tumor suppressor restrains mTORC1 signaling by interacting with lysosomal complexes. Loss of TMEM127 leads to increased mTORC1 activation, explaining its role in certain cancers.
Area of Science:
- Cell Biology
- Molecular Oncology
- Signal Transduction
Background:
- The TMEM127 tumor suppressor gene is frequently mutated in pheochromocytomas, leading to increased mTORC1 signaling through unknown mechanisms.
- TMEM127 encodes a transmembrane protein whose function in cancer development remains largely uncharacterized.
Purpose of the Study:
- To elucidate the molecular mechanisms by which TMEM127 regulates mTORC1 signaling.
- To investigate the interaction of TMEM127 with key components of the mTORC1 pathway at the lysosome.
Main Methods:
- Co-immunoprecipitation assays to identify TMEM127 interacting partners.
- Analysis of mTORC1 pathway activation in TMEM127-deficient cells and tumors.
- Cellular localization studies of TMEM127 and associated proteins.
Main Results:
- TMEM127 directly interacts with the lysosome-anchored Rag GTPase-LAMTOR-vATPase complex, which mediates amino acid-dependent mTORC1 activation.
- TMEM127 expression inhibits mTORC1 recruitment to Rag GTPases under nutrient-rich conditions.
- Loss of TMEM127 results in accumulation of LAMTOR proteins in the lysosome and increased mTORC1 signaling, observed in both cellular models and patient tumors.
Conclusions:
- TMEM127 functions as a negative regulator of mTORC1 signaling by modulating the lysosomal Ragulator complex.
- These findings explain the heightened mTORC1 activation in TMEM127-deficient tumors and highlight TMEM127's role in tumor suppression.
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