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Preclinical Strategies to Identify Off-Target Toxicity of High-Affinity TCRs
Helena M Bijen1, Dirk M van der Steen1, Renate S Hagedoorn1
1Department of Hematology, Leiden University Medical Center, Leiden, the Netherlands.
Abstract:
Adoptive transfer of T cells engineered with a cancer-specific T cell receptor (TCR) has demonstrated clinical benefit. However, the risk for off-target toxicity of TCRs remains a concern. Here, we examined the cross-reactive profile of T cell clone (7B5) with a high functional sensitivity for the hematopoietic-restricted minor histocompatibility antigen HA-2 in the context of HLA-A*02:01. HA-2pos Epstein-Barr virus-transformed B lymphoblastic cell lines (EBV-LCLs) and primary acute myeloid leukemia samples, but not hematopoietic HA-2neg samples, are effectively recognized. However, we found unexpected off-target recognition of human fibroblasts and keratinocytes not expressing the HA-2 antigen. To uncover the origin of this off-target recognition, we performed an alanine scanning approach, identifying six out of nine positions to be important for peptide recognition. This indicates a low risk for broad cross-reactivity. However, using a combinatorial peptide library scanning approach, we identified a CDH13-derived peptide activating the 7B5 T cell clone. This was confirmed by recognition of CDH13-transduced EBV-LCLs and cell subsets endogenously expressing CDH13, such as proximal tubular epithelial cells. As such, we recommend the use of a combinatorial peptide library scan followed by screening against additional cell subsets to validate TCR specificity and detect off-target toxicity due to cross-reactivity directed against unrelated peptides before selecting candidate TCRs for clinical testing.
Insights
T-cell receptor (TCR) therapy shows promise for cancer but carries toxicity risks. This study identified an unexpected cross-reactivity with a CDH13 peptide, highlighting the need for thorough TCR specificity screening to prevent off-target effects.
Area of Science:
- Immunology
- Oncology
- Cell Biology
Background:
- Adoptive T-cell therapy using engineered T-cell receptors (TCRs) offers clinical benefits for cancer treatment.
- A significant concern with TCR-based therapies is the potential for off-target toxicity due to unintended T-cell activation.
Purpose of the Study:
- To investigate the cross-reactive profile of a specific T-cell clone (7B5) targeting the minor histocompatibility antigen HA-2.
- To identify the cause of unexpected off-target recognition observed in T-cell clone 7B5.
- To establish improved methods for validating TCR specificity and detecting potential toxicities before clinical application.
Main Methods:
- Utilized an alanine scanning approach to analyze peptide recognition by the 7B5 T-cell clone.
- Employed a combinatorial peptide library scanning approach to identify novel peptide targets.
- Validated findings by assessing T-cell recognition of CDH13-transduced cell lines and endogenous CDH13-expressing cells.
Main Results:
- The 7B5 T-cell clone effectively recognized HA-2 positive cells but also exhibited off-target recognition of fibroblasts and keratinocytes.
- Alanine scanning indicated a low risk for broad cross-reactivity, suggesting specific peptide interactions.
- A CDH13-derived peptide was identified as an unexpected activator of the 7B5 T-cell clone, confirmed by recognition of CDH13-expressing cells, including proximal tubular epithelial cells.
Conclusions:
- TCR specificity validation requires more than just assessing the primary target antigen.
- Combinatorial peptide library scanning is crucial for uncovering cross-reactivities with unrelated peptides.
- Comprehensive screening, including assessment against diverse cell subsets, is recommended to mitigate off-target toxicity risks in TCR-based therapies.
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