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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
A non-canonical tumor suppressive role for the long non-coding RNA MALAT1 in colon and breast cancers
Zhi Hao Kwok1, Veronique Roche1, Xiao Hong Chew1
1Cancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Abstract:
Long noncoding RNAs (lncRNAs) constitute one of the largest classes of transcripts and have been widely implicated in various diseases such as cancer. Increasing evidence suggests that several lncRNAs are dysregulated and play critical roles in tumorigenesis. LncRNAs can be regulated by key oncogenes and tumor suppressors, adding complexity to the intricate crosstalk between protein coding genes and the noncoding transcriptome. In our study, we investigated the effect that dysregulation of the key tumor suppressor PTEN has on the noncoding transcriptome. We identified the lncRNA metastasis associated lung adenocarcinoma transcript 1 (MALAT1) as a target of PTEN and find that this regulation is conserved in both human and mouse as well as with both chronic and acute PTEN dysregulation. We show that this regulation is at least in part microRNA (miRNA)-dependent, and characterize the miRNAs that may be mediating this crosstalk. In summary, we establish and characterize a non-canonical PTEN-microRNA-MALAT1 axis that regulates tumorigenesis and describe for the first time that the MALAT1 lncRNA possesses novel tumor suppressive properties in colon and breast cancers.
Insights
The tumor suppressor PTEN regulates the long noncoding RNA MALAT1 via microRNAs. This newly identified axis reveals MALAT1
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- Long noncoding RNAs (lncRNAs) are implicated in various diseases, particularly cancer.
- Dysregulation of lncRNAs, including metastasis associated lung adenocarcinoma transcript 1 (MALAT1), plays critical roles in tumorigenesis.
- The interplay between protein-coding genes and the noncoding transcriptome is complex, involving oncogenes and tumor suppressors.
Purpose of the Study:
- To investigate the impact of PTEN tumor suppressor dysregulation on the noncoding transcriptome.
- To identify and characterize the regulatory axis involving PTEN, microRNAs, and MALAT1 in tumorigenesis.
Main Methods:
- Investigated PTEN's effect on the noncoding transcriptome.
- Identified MALAT1 as a target of PTEN regulation.
- Characterized the microRNA-dependent mechanisms mediating PTEN-MALAT1 crosstalk.
Main Results:
- PTEN dysregulation affects the lncRNA MALAT1.
- This PTEN-MALAT1 regulation is conserved across species and PTEN dysregulation types.
- A non-canonical PTEN-microRNA-MALAT1 axis regulating tumorigenesis was established and characterized.
- MALAT1 exhibits novel tumor-suppressive properties in colon and breast cancers.
Conclusions:
- Established a novel PTEN-microRNA-MALAT1 regulatory axis.
- Demonstrated MALAT1's tumor-suppressive role in colon and breast cancers.
- Highlighted the significance of noncoding RNA regulation in cancer development.
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