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ER+ Breast Cancers Resistant to Prolonged Neoadjuvant Letrozole Exhibit an E2F4 Transcriptional Program Sensitive to
Angel L Guerrero-Zotano1, Thomas P Stricker2, Luigi Formisano1
1Departments of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Abstract:
Purpose: This study aimed to identify biomarkers of resistance to endocrine therapy in estrogen receptor-positive (ER+) breast cancers treated with prolonged neoadjuvant letrozole.Experimental Design: We performed targeted DNA and RNA sequencing in 68 ER+ breast cancers from patients treated with preoperative letrozole (median, 7 months).Results: Twenty-four tumors (35%) exhibited a PEPI score ≥4 and/or recurred after a median of 58 months and were considered endocrine resistant. Integration of the 47 most upregulated genes (log FC > 1, FDR < 0.03) in letrozole-resistant tumors with transcription-binding data showed significant overlap with 20 E2F4-regulated genes (P = 2.56E-15). In patients treated with the CDK4/6 inhibitor palbociclib before surgery, treatment significantly decreased expression of 24 of the 47 most upregulated genes in letrozole-resistant tumors, including 18 of the 20 E2F4 target genes. In long-term estrogen-deprived ER+ breast cancer cells, palbociclib also downregulated all 20 E2F4 target genes and P-RB levels, whereas the ER downregulator fulvestrant or paclitaxel only partially suppressed expression of this set of genes and had no effect on P-RB. Finally, an E2F4 activation signature was strongly associated with resistance to aromatase inhibitors in the ACOSOG Z1031B neoadjuvant trial and with an increased risk of relapse in adjuvant-treated ER+ tumors in METABRIC.Conclusions: In tumors resistant to prolonged neoadjuvant letrozole, we identified a gene expression signature of E2F4 target activation. CDK4/6 inhibition suppressed E2F4 target gene expression in estrogen-deprived ER+ breast cancer cells and in patients' ER+ tumors, suggesting a potential benefit of adjuvant CDK4/6 inhibitors in patients with ER+ breast cancer who fail to respond to preoperative estrogen deprivation. Clin Cancer Res; 24(11); 2517-29. ©2018 AACR.
Insights
This study identified an E2F4 target gene signature linked to endocrine resistance in ER+ breast cancer. CDK4/6 inhibitors suppressed this signature, suggesting their potential benefit for patients resistant to estrogen deprivation therapy.
Area of Science:
- Oncology
- Molecular Biology
- Genomics
Background:
- Endocrine therapy resistance is a major challenge in estrogen receptor-positive (ER+) breast cancer treatment.
- Prolonged neoadjuvant endocrine therapy aims to improve surgical outcomes but can lead to resistance.
- Identifying biomarkers for endocrine resistance is crucial for optimizing treatment strategies.
Purpose of the Study:
- To identify biomarkers associated with resistance to prolonged neoadjuvant letrozole in ER+ breast cancer.
- To investigate the role of E2F4 target gene activation in endocrine resistance.
- To evaluate the efficacy of CDK4/6 inhibitors in overcoming endocrine resistance.
Main Methods:
- Targeted DNA and RNA sequencing of 68 ER+ breast tumors treated with neoadjuvant letrozole.
- Integration of gene expression data with transcription-binding data to identify regulatory networks.
- Analysis of gene expression changes in response to CDK4/6 inhibitors (palbociclib), fulvestrant, and paclitaxel in cell lines and patient tumors.
- Correlation of E2F4 activation signature with clinical outcomes in independent breast cancer trials.
Main Results:
- A gene expression signature of E2F4 target activation was identified in tumors resistant to letrozole.
- CDK4/6 inhibitor palbociclib significantly downregulated E2F4 target genes in both preclinical models and patient tumors.
- E2F4 activation signature correlated with resistance to aromatase inhibitors and increased relapse risk in ER+ breast cancer patients.
- Fulvestrant and paclitaxel showed less efficacy in suppressing the E2F4 target gene signature compared to palbociclib.
Conclusions:
- E2F4 target gene activation represents a key mechanism in endocrine resistance to prolonged neoadjuvant letrozole.
- CDK4/6 inhibition effectively suppresses the E2F4 activation signature, offering a potential therapeutic strategy.
- Adjuvant CDK4/6 inhibitors may benefit ER+ breast cancer patients who exhibit resistance to neoadjuvant estrogen deprivation therapy.
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