ER+ Breast Cancers Resistant to Prolonged Neoadjuvant Letrozole Exhibit an E2F4 Transcriptional Program Sensitive to

Angel L Guerrero-Zotano1, Thomas P Stricker2, Luigi Formisano1

  • 1Departments of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.

Insights

This study identified an E2F4 target gene signature linked to endocrine resistance in ER+ breast cancer. CDK4/6 inhibitors suppressed this signature, suggesting their potential benefit for patients resistant to estrogen deprivation therapy.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genomics

Background:

  • Endocrine therapy resistance is a major challenge in estrogen receptor-positive (ER+) breast cancer treatment.
  • Prolonged neoadjuvant endocrine therapy aims to improve surgical outcomes but can lead to resistance.
  • Identifying biomarkers for endocrine resistance is crucial for optimizing treatment strategies.

Purpose of the Study:

  • To identify biomarkers associated with resistance to prolonged neoadjuvant letrozole in ER+ breast cancer.
  • To investigate the role of E2F4 target gene activation in endocrine resistance.
  • To evaluate the efficacy of CDK4/6 inhibitors in overcoming endocrine resistance.

Main Methods:

  • Targeted DNA and RNA sequencing of 68 ER+ breast tumors treated with neoadjuvant letrozole.
  • Integration of gene expression data with transcription-binding data to identify regulatory networks.
  • Analysis of gene expression changes in response to CDK4/6 inhibitors (palbociclib), fulvestrant, and paclitaxel in cell lines and patient tumors.
  • Correlation of E2F4 activation signature with clinical outcomes in independent breast cancer trials.

Main Results:

  • A gene expression signature of E2F4 target activation was identified in tumors resistant to letrozole.
  • CDK4/6 inhibitor palbociclib significantly downregulated E2F4 target genes in both preclinical models and patient tumors.
  • E2F4 activation signature correlated with resistance to aromatase inhibitors and increased relapse risk in ER+ breast cancer patients.
  • Fulvestrant and paclitaxel showed less efficacy in suppressing the E2F4 target gene signature compared to palbociclib.

Conclusions:

  • E2F4 target gene activation represents a key mechanism in endocrine resistance to prolonged neoadjuvant letrozole.
  • CDK4/6 inhibition effectively suppresses the E2F4 activation signature, offering a potential therapeutic strategy.
  • Adjuvant CDK4/6 inhibitors may benefit ER+ breast cancer patients who exhibit resistance to neoadjuvant estrogen deprivation therapy.

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