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Updated: Feb 12, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
EPR-based oximetric imaging: a combination of single point-based spatial encoding and T1 weighting
Ken-Ichiro Matsumoto1,2, Shun Kishimoto3, Nallathamby Devasahayam3
1Quantitative RedOx Sensing Team, Department of Basic Medical Sciences for Radiation Damage, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology, Chiba, Japan.
Spin-lattice relaxation rate (R1)-based EPR oximetry offers improved oxygen resolution for in vivo applications. This method provides better precision in low oxygen conditions compared to R2* estimation, demonstrating its utility for small animal studies.
Area of Science:
- Magnetic Resonance Imaging
- Biophysics
- Medical Physics
Background:
- Electron Paramagnetic Resonance (EPR) oximetry is crucial for assessing tissue oxygen levels.
- Spin-lattice relaxation rate (R1) is a key parameter influenced by oxygen concentration.
- Trityl-based probes like Oxo71 are used for EPR oximetry.
Purpose of the Study:
- To evaluate the efficacy of R1-based time-domain EPR oximetry for in vivo applications.
- To compare the performance of R1-based oximetry with R2*-based methods in determining partial oxygen pressure (pO2).
- To assess the spatial and oxygen resolution of R1-based EPR oximetry in small animal models.
Main Methods:
- R1 dependence of Oxo71 on pO2 was measured using single-point imaging and rapid repetition.
- R1 was determined across 22 repetition times (2.1–40.0 µs) at 300 MHz.
- Simultaneous pO2 mapping using R1 and apparent spin-spin relaxation rate (R2*) was performed on phantoms with varying oxygen concentrations (0%, 2%, 5%).
Main Results:
- R1 and R2* derived pO2 maps correlated with known oxygen levels in phantom studies.
- R1-based estimation demonstrated superior pO2 resolution in low oxygen regions compared to R2*.
- In vivo R1-based oximetry in tumor xenografts showed homogeneous profiles in hypoxic areas, similar to R2* methods.
- Scan time for R1 mapping can be reduced by using fewer repetition times (e.g., 3 times between 4.0–12.0 µs).
Conclusions:
- R1-based EPR oximetry using a single-point imaging modality provides valuable spatial and oxygen resolution for small animal research.
- This technique offers improved accuracy in low pO2 environments, enhancing its applicability in preclinical studies.
- The method is efficient, with potential for reduced scan times, making it practical for in vivo assessments.
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