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Updated: Feb 12, 2026

Assessing Respiratory Immune Responses to Haemophilus Influenzae
Published on: June 29, 2021
Genotypic characterization of Haemophilus influenzae isolates from paediatric patients in Japan
Yoko Adachi1, Mariko Ando1, Miyuki Morozumi1
1Department of Infectious Diseases, Keio University School of Medicine, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.
Abstract:
Purpose. β-lactamase-negative ampicillin-resistant (BLNAR) Haemophilus influenzae is frequently isolated from respiratory samples and is particularly problematic in Japan. The aim of this study was to characterize circulating isolates of H. influenzae genotypically by BLNAR-PCR and multilocus sequence typing (MLST), and to determine any associations between them.Methods. H. influenzae isolates (n=191) were collected from paediatric patients (1 month to 12 years old) between 2000 and 2011 for three types of infections: pneumonia (n=61), acute otitis media (AOM) (n=68) and meningitis (n=62). All were characterized for capsular type by agglutination tests, and for β-lactam resistance by real-time PCR. The sequence types (STs) determined by MLST were analysed using eburst v3.Results. Eighty-eight out of 191 (46.1 %) H. influenzae isolates were BLNAR by PCR; 37 of 61 (60.7 %) from pneumonia; 33 of 68 (48.5 %) from AOM and 18 of 62 (29.0 %) from meningitis cases. MLST identified 40 and 44 STs among isolates from pneumonia and AOM, respectively. BLNAR were found in singletons such as ST156 in pneumonia, and ST161 and ST396 in AOM. In contrast, eight STs were identified in meningitis, of which seven were genotypically closely related, while ST54 was the most frequent (62.9 %), unlike in the MLST database registrations, where ST6 predominated.Conclusion. Non-typeable H. influenzae (NTHi), mostly derived from pneumonia and AOM, were genetically diverse, in contrast to the predominance of H. influenzae type b (Hib) among meningitis cases. The associations between certain STs and β-lactam resistance among NTHi were confirmed.
Insights
β-lactamase-negative ampicillin-resistant (BLNAR) Haemophilus influenzae is common in respiratory infections. This study genetically characterized BLNAR isolates, revealing diverse strains in pneumonia and acute otitis media, unlike the predominant Hib in meningitis.
Area of Science:
- Medical Microbiology
- Genetics
- Infectious Diseases
Background:
- β-lactamase-negative ampicillin-resistant (BLNAR) *Haemophilus influenzae* is a significant pathogen, particularly in Japan.
- BLNAR strains pose challenges in treating respiratory tract infections.
Purpose of the Study:
- To genetically characterize BLNAR *Haemophilus influenzae* isolates.
- To determine associations between genotypic characteristics and resistance patterns.
- To investigate the epidemiology of BLNAR *H. influenzae* in paediatric infections.
Main Methods:
- Collected 191 *H. influenzae* isolates from paediatric pneumonia, acute otitis media (AOM), and meningitis cases (2000-2011).
- Performed BLNAR-PCR for β-lactam resistance and multilocus sequence typing (MLST) for genotypic characterization.
- Analyzed sequence types (STs) using eBURST v3.
Main Results:
- 46.1% (88/191) of isolates were BLNAR.
- BLNAR strains were prevalent in pneumonia (60.7%) and AOM (48.5%) but less so in meningitis (29.0%).
- MLST revealed genetic diversity in non-typeable *H. influenzae* (NTHi) from pneumonia and AOM, with specific STs associated with BLNAR. Meningitis cases were dominated by ST54, distinct from the common ST6 in databases.
Conclusions:
- Non-typeable *H. influenzae* (NTHi) from pneumonia and AOM exhibit significant genetic diversity.
- *Haemophilus influenzae* type b (Hib) remains predominant in meningitis cases.
- Confirmed associations between specific STs and β-lactam resistance in NTHi.
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