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Outlier Removal in Model-Based Missing Value Imputation for Medical Datasets.

Min-Wei Huang1,2, Wei-Chao Lin3,4, Chih-Fong Tsai5

  • 1School of Medicine, China Medical University, Taichung, Taiwan.

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Summary

Instance selection combined with missing value imputation improves medical data analysis, especially for numerical and mixed data types. This approach enhances imputation reliability compared to imputation alone.

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Area of Science:

  • Data Science
  • Machine Learning
  • Medical Informatics

Background:

  • Real-world medical datasets frequently exhibit missing attribute values, necessitating imputation techniques.
  • Standard missing value imputation can be compromised by noisy data or outliers, leading to unreliable estimations.
  • Instance selection is explored as a preprocessing step to potentially enhance imputation accuracy.

Purpose of the Study:

  • To evaluate if combining instance selection with missing value imputation outperforms imputation alone in medical datasets.
  • To identify optimal combinations of instance selection and imputation algorithms for improved data quality.

Main Methods:

  • Utilized three instance selection algorithms: DROP3, Genetic Algorithm (GA), and Instance-Based 3 (IB3).
  • Employed three imputation algorithms: K-Nearest Neighbors Imputation (KNNI), Multilayer Perceptron (MLP), and Support Vector Machine (SVM).
  • Experimentally compared the performance of combined methods against imputation alone across different medical data types.

Main Results:

  • Instance selection positively impacted missing value imputation for numerical medical datasets.
  • Specific combinations of instance selection and imputation methods improved results for mixed data types.
  • Instance selection did not consistently benefit imputation for categorical medical datasets.

Conclusions:

  • Combining instance selection with missing value imputation is a viable strategy to enhance data quality in medical datasets.
  • The effectiveness of instance selection depends on the data type (numerical, mixed, categorical) and the chosen algorithms.
  • Further research may explore tailored approaches for categorical data to leverage instance selection benefits.