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Updated: Feb 12, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
A novel frameshift variant in the CADASIL gene NOTCH3: pathogenic or not?
V Schubert1, B Bender2, M Kinzel3
1Zentrum für Neurologie, Hertie-Institut für Klinische Hirnforschung, Universitätsklinikum Tübingen, Hoppe-Seyler-Str. 3, 72076, Tübingen, Germany.
Insights
A novel NOTCH3 frameshift variant was identified in a family without classic CADASIL symptoms. This finding suggests that some NOTCH3 variants may not cause cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy.
Area of Science:
- Genetics
- Neurology
- Vascular Biology
Background:
- Cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy (CADASIL) is the most common monogenic cause of adult-onset ischemic stroke and vascular dementia.
- CADASIL is typically caused by mutations in the NOTCH3 gene, affecting cysteine residues in the Notch3 protein.
- The role of non-canonical NOTCH3 variants, particularly those leading to a hypomorphic Notch3 protein, is debated.
Abstract:
Cerebral autosomal dominant arteriopathy with subcortical infarcts and leucoencephalopathy (CADASIL) represents the most common monogenic cause of adult-onset ischemic stroke and vascular dementia. It is caused by heterozygous missense mutations in the NOTCH3 gene, encoding a transmembrane receptor protein on vascular smooth muscle cells. Classical CADASIL mutations affect conserved cysteine residues of the Notch3 protein. By contrast, the role of non-canonical genetic variation in NOTCH3, in particular of variants causing a hypomorphic Notch3 protein, is subject to an ongoing scientific debate. In this context, we here report a novel NOTCH3 frameshift variant in exon 18 (NM_000435.2: c.2853_2857delTCCCG), causing a frameshift and introducing a premature stop codon, which was detected in a 43-year-old woman and her father. Both carriers of the variant were carefully evaluated, including serial follow-up in the index. Neither clinical nor imaging features provided convincing evidence for a classical CADASIL phenotype, thus reinforcing the concept of hypomorphic NOTCH3 variants most likely not being causative for CADASIL. Our finding, which is discussed in the light of the published literature, has practical implications for interpreting results of NOTCH3 molecular genetic testing as well as patient counseling.
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