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Updated: Feb 12, 2026

Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Mismatch repair single nucleotide polymorphisms and thyroid cancer susceptibility
Luís S Santos1,2, Susana N Silva1, Octávia M Gil1,3
1Centre for Toxicogenomics and Human Health (ToxOmics), Genetics, Oncology and Human Toxicology, NOVA Medical School, Faculdade de Ciências Médicas, Universidade Nova de Lisboa, 1169-056 Lisboa, Portugal.
Certain DNA mismatch repair gene variants, particularly in MSH6, may increase susceptibility to well-differentiated thyroid cancer (DTC). These genetic markers, alone or combined, could aid in personalized DTC prevention strategies.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Thyroid cancer (TC) is a rising global health concern, with ionizing radiation and heritability as known risk factors.
- Limited understanding of genetic susceptibility to TC persists despite advances in genome-wide association studies.
- The DNA mismatch repair (MMR) system's potential role in TC pathogenesis is suggested by preliminary research.
Purpose of the Study:
- To investigate the association between specific DNA mismatch repair (MMR) gene single nucleotide polymorphisms (SNPs) and susceptibility to well-differentiated thyroid cancer (DTC).
- To evaluate the potential of MMR SNPs as biomarkers for DTC risk stratification.
Main Methods:
- A case-control study involving 106 DTC patients and 212 controls of Caucasian Portuguese descent.
- Genotyping of six MMR SNPs (MLH1, MSH3, MSH4, PMS1, MLH3, MSH6) using TaqMan® assays.
- Statistical analysis to calculate genotype-associated risk estimates, including adjusted odds ratios (OR) and confidence intervals (CI).
Main Results:
- The MSH6 rs1042821 variant homozygote genotype was associated with a significantly increased risk of DTC (OR=3.42-3.84, P=0.03-0.04).
- This increased risk was particularly notable in individuals with follicular histotype and female sex.
- Combinations of MMR SNPs, including MSH6, showed both increased risk and potential protective effects, suggesting complex gene interactions.
Conclusions:
- Specific MMR SNPs, notably MSH6 rs1042821, may contribute to individual susceptibility to well-differentiated thyroid cancer.
- The findings support the role of MMR system variations in DTC pathogenesis.
- Further research is warranted to validate these SNPs as biomarkers for personalized DTC prevention and optimized cancer policies.
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