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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Dependence on the Pyrimidine Biosynthetic Enzyme DHODH Is a Synthetic Lethal Vulnerability in Mutant KRAS-Driven
Malvika Koundinya1, Judith Sudhalter1, Albane Courjaud2
1Cancer Biology, Oncology Division, Sanofi, Cambridge, MA 02138, USA.
Abstract:
Activating KRAS mutations are major oncogenic drivers in multiple tumor types. Synthetic lethal screens have previously been used to identify targets critical for the survival of KRAS mutant cells, but their application to drug discovery has proven challenging, possibly due in part to a failure of monolayer cultures to model tumor biology. Here, we report the results of a high-throughput synthetic lethal screen for small molecules that selectively inhibit the growth of KRAS mutant cell lines in soft agar. Chemoproteomic profiling identifies the target of the most KRAS-selective chemical series as dihydroorotate dehydrogenase (DHODH). DHODH inhibition is shown to perturb multiple metabolic pathways. In vivo preclinical studies demonstrate strong antitumor activity upon DHODH inhibition in a pancreatic tumor xenograft model.
Insights
Researchers identified dihydroorotate dehydrogenase (DHODH) as a key target for KRAS mutant cancers. Inhibiting DHODH shows potent antitumor activity in preclinical models, offering a new therapeutic strategy.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Activating KRAS mutations are critical drivers in various cancers.
- Traditional synthetic lethal screens in monolayer cultures may not fully represent tumor biology, limiting drug discovery.
- Developing effective KRAS-targeted therapies remains a significant challenge.
Purpose of the Study:
- To identify novel small molecules selectively inhibiting KRAS-mutant cancer cell growth using a high-throughput screen.
- To uncover the molecular targets of these identified inhibitors.
- To evaluate the therapeutic potential of targeting identified pathways in preclinical cancer models.
Main Methods:
- High-throughput synthetic lethal screening of small molecules in soft agar to model tumor microenvironment.
- Chemoproteomic profiling to identify the molecular targets of active compounds.
- Metabolic pathway analysis to understand the effects of target inhibition.
- In vivo studies using pancreatic tumor xenograft models to assess antitumor efficacy.
Main Results:
- A screen identified selective inhibitors of KRAS-mutant cell growth in soft agar.
- Chemoproteomic profiling pinpointed dihydroorotate dehydrogenase (DHODH) as the target for the most potent KRAS-selective compounds.
- DHODH inhibition was found to disrupt multiple cellular metabolic pathways.
- Significant antitumor activity was observed in vivo in a pancreatic cancer xenograft model upon DHODH inhibition.
Conclusions:
- Dihydroorotate dehydrogenase (DHODH) is a validated synthetic lethal target in KRAS-mutant cancers.
- Targeting DHODH with small molecule inhibitors demonstrates promising preclinical efficacy.
- DHODH inhibition represents a potential therapeutic strategy for KRAS-driven tumors.
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