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LipidPedia: a comprehensive lipid knowledgebase.

Tien-Chueh Kuo1,2, Yufeng Jane Tseng1,2,3,4

  • 1Graduate Institute of Biomedical Engineering and Bioinformatics, National Taiwan University, Taipei, Taiwan.

Bioinformatics (Oxford, England)
|April 13, 2018
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Summary
This summary is machine-generated.

LipidPedia is a new comprehensive knowledgebase that consolidates information on over 3923 lipids, addressing the challenge of fragmented lipid data. This resource aids researchers in understanding complex lipid functions and mechanisms.

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Area of Science:

  • Biochemistry
  • Bioinformatics
  • Molecular Biology

Background:

  • Lipids encompass diverse classes like fatty acyls, glycerolipids, and sphingolipids, crucial for energy storage, cell membranes, and signaling.
  • The vast number of identified lipids (over 36 million) and complex nomenclature hinder comprehensive data accessibility.
  • Existing lipid databases lack integrated information, posing challenges for researchers seeking to understand lipid roles and mechanisms.

Purpose of the Study:

  • To develop LipidPedia, a centralized and comprehensive lipid knowledgebase.
  • To integrate diverse lipid annotation data with full-text mining from scientific literature.
  • To provide detailed information on lipid functions, associated diseases, pathways, and cellular locations.

Main Methods:

  • Integrated annotation data with full-text mining from over 1.4 million scientific publications.
  • Compiled information on 3923 lipids and over 400,000 associated annotations.
  • Curated lipid entries with summaries from frequently cited literature on diseases, pathways, genes, and experimental models.

Main Results:

  • LipidPedia offers a comprehensive knowledgebase for over 3923 lipids.
  • Contains more than 400,000 annotations linking lipids to diseases, pathways, functions, and locations.
  • Provides curated summaries and detailed references for each lipid, facilitating research.

Conclusions:

  • LipidPedia serves as a valuable resource for understanding lipid biology.
  • The knowledgebase simplifies the discovery of information related to lipid functions and mechanisms.
  • Facilitates research by providing a unified and detailed overview of lipid data.