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Updated: Feb 11, 2026

Simultaneous Data Collection of fMRI and fNIRS Measurements Using a Whole-Head Optode Array and Short-Distance Channels
Published on: October 20, 2023
Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
Chiara Bulgarelli1, Anna Blasi1, Simon Arridge2
1Centre for Brain and Cognitive Development, Birkbeck College, University of London, United Kingdom.
Insights
This study validates Dynamic Causal Modelling (DCM) for infant functional near-infrared spectroscopy (fNIRS) brain connectivity analysis. The method shows high reliability, enabling advanced infant neuroscience research.
Area of Science:
- Neuroscience
- Developmental Neuroscience
- Brain Connectivity
Background:
- Tracking infant brain connectivity is crucial for developmental neuroscience.
- Functional near-infrared spectroscopy (fNIRS) is ideal for infant brain studies due to its portability and safety.
- Existing fNIRS data analysis methods are less developed than those for fMRI, particularly for connectivity.
Purpose of the Study:
- To provide a proof-of-principle for applying Dynamic Causal Modelling (DCM) to infant fNIRS data.
- To demonstrate the robustness of DCM for infant fNIRS using simultaneous fMRI-fNIRS recordings.
- To establish a data analysis pipeline for future infant effective connectivity research.
Main Methods:
- Simultaneous fMRI and fNIRS recording from a 6-month-old infant during auditory stimulation.
- Preprocessing of fMRI and fNIRS data using SPM and general linear model.
- Adapting DCM for infant fNIRS, addressing challenges in structural image import, spatial registration, segmentation, meshing, and optical sensitivity estimation.
Main Results:
- High correspondence in variational Free Energy (F), Bayesian Model Selection (BMS), and Bayesian Model Average (BMA) between fMRI and fNIRS data.
- Demonstrated high reliability of DCM when applied to infant fNIRS data.
- Successfully adapted DCM for infant fNIRS, overcoming key technical challenges.
Conclusions:
- Dynamic Causal Modelling (DCM) is a reliable method for analyzing effective connectivity in infant fNIRS data.
- This study provides a validated pipeline and guidance for applying DCM to infant fNIRS.
- Opens new research avenues for understanding brain connectivity in infancy.
Abstract:
Tracking the connectivity of the developing brain from infancy through childhood is an area of increasing research interest, and fNIRS provides an ideal method for studying the infant brain as it is compact, safe and robust to motion. However, data analysis methods for fNIRS are still underdeveloped compared to those available for fMRI. Dynamic causal modelling (DCM) is an advanced connectivity technique developed for fMRI data, that aims to estimate the coupling between brain regions and how this might be modulated by changes in experimental conditions. DCM has recently been applied to adult fNIRS, but not to infants. The present paper provides a proof-of-principle for the application of this method to infant fNIRS data and a demonstration of the robustness of this method using a simultaneously recorded fMRI-fNIRS single case study, thereby allowing the use of this technique in future infant studies. fMRI and fNIRS were simultaneously recorded from a 6-month-old sleeping infant, who was presented with auditory stimuli in a block design. Both fMRI and fNIRS data were preprocessed using SPM, and analysed using a general linear model approach. The main challenges that adapting DCM for fNIRS infant data posed included: (i) the import of the structural image of the participant for spatial pre-processing, (ii) the spatial registration of the optodes on the structural image of the infant, (iii) calculation of an accurate 3-layer segmentation of the structural image, (iv) creation of a high-density mesh as well as (v) the estimation of the NIRS optical sensitivity functions. To assess our results, we compared the values obtained for variational Free Energy (F), Bayesian Model Selection (BMS) and Bayesian Model Average (BMA) with the same set of possible models applied to both the fMRI and fNIRS datasets. We found high correspondence in F, BMS, and BMA between fMRI and fNIRS data, therefore showing for the first time high reliability of DCM applied to infant fNIRS data. This work opens new avenues for future research on effective connectivity in infancy by contributing a data analysis pipeline and guidance for applying DCM to infant fNIRS data.
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