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Updated: Feb 11, 2026

Spatiotemporal Control of Protein Activity through Optogenetic Allosteric Regulation
Published on: October 4, 2024
Allosteric Activation Dictates PRC2 Activity Independent of Its Recruitment to Chromatin
Chul-Hwan Lee1, Jia-Ray Yu1, Sunil Kumar2
1Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Abstract:
PRC2 is a therapeutic target for several types of cancers currently undergoing clinical trials. Its activity is regulated by a positive feedback loop whereby its terminal enzymatic product, H3K27me3, is specifically recognized and bound by an aromatic cage present in its EED subunit. The ensuing allosteric activation of the complex stimulates H3K27me3 deposition on chromatin. Here we report a stepwise feedback mechanism entailing key residues within distinctive interfacing motifs of EZH2 or EED that are found to be mutated in cancers and/or Weaver syndrome. PRC2 harboring these EZH2 or EED mutants manifested little activity in vivo but, unexpectedly, exhibited similar chromatin association as wild-type PRC2, indicating an uncoupling of PRC2 activity and recruitment. With genetic and chemical tools, we demonstrated that targeting allosteric activation overrode the gain-of-function effect of EZH2Y646X oncogenic mutations. These results revealed critical implications for the regulation and biology of PRC2 and a vulnerability in tackling PRC2-addicted cancers.
Insights
Polycomb Repressive Complex 2 (PRC2) activity is regulated by a feedback loop. Targeting its allosteric activation overrides cancer-driving mutations, revealing a vulnerability in PRC2-addicted cancers.
Area of Science:
- Biochemistry
- Epigenetics
- Cancer Biology
Background:
- Polycomb Repressive Complex 2 (PRC2) is a key epigenetic regulator and a therapeutic target in oncology.
- PRC2 activity is modulated by a positive feedback loop involving its product, H3K27me3, and the EED subunit.
- Mutations in PRC2 subunits (EZH2, EED) are implicated in cancers and Weaver syndrome.
Purpose of the Study:
- To elucidate the stepwise feedback mechanism regulating PRC2 activity.
- To investigate the functional consequences of cancer-associated PRC2 mutations.
- To identify therapeutic strategies targeting PRC2-addicted cancers.
Main Methods:
- Site-directed mutagenesis of EZH2 and EED.
- In vivo activity assays for mutant PRC2 complexes.
- Chromatin immunoprecipitation to assess PRC2 recruitment.
- Genetic and chemical inhibition of PRC2 allosteric activation.
Main Results:
- Mutant PRC2 complexes showed reduced enzymatic activity but maintained chromatin association.
- A stepwise feedback mechanism involving specific residues in EZH2/EED was identified.
- Targeting allosteric activation effectively counteracted oncogenic PRC2 mutations (e.g., EZH2Y646X).
Conclusions:
- The study reveals a critical regulatory mechanism for PRC2 activity.
- PRC2 activity and chromatin recruitment can be uncoupled.
- Targeting PRC2 allosteric activation presents a promising therapeutic strategy for cancers dependent on PRC2.
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