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Related Concept Videos

What is Gene Expression?01:42

What is Gene Expression?

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Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
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What is Gene Expression?01:36

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A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
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Cell Specific Gene Expression01:58

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Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
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Cell Specific Gene Expression

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mRNA Stability and Gene Expression02:51

mRNA Stability and Gene Expression

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The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
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Related Experiment Video

Updated: Feb 11, 2026

Using an Automated Cell Counter to Simplify Gene Expression Studies: siRNA Knockdown of IL-4 Dependent Gene Expression in Namalwa Cells
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Different Neuronal Activity Patterns Induce Different Gene Expression Programs.

Kelsey M Tyssowski1, Nicholas R DeStefino1, Jin-Hyung Cho1

  • 1Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.

Neuron
|April 24, 2018
PubMed
Summary
This summary is machine-generated.

Neuronal activity duration can be decoded from gene expression. Brief neuronal activity triggers specific genes via MAPK/ERK signaling, distinct from sustained activity gene programs.

Keywords:
MAPKRNA-seqactivity-regulated enhancersactivity-regulated transcriptioncoupling mapeRNAimmediate early genesmitogen-activated protein kinaseneuronal activity durationneuronal activity patternsprimary response genes

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Area of Science:

  • Neuroscience
  • Molecular Biology
  • Systems Biology

Background:

  • Neuronal activity patterns regulate gene expression, influencing synaptic plasticity.
  • Understanding the link between activity patterns and gene induction is crucial for inferring neural activity history.

Purpose of the Study:

  • To investigate if neuronal activity duration can be inferred from gene expression profiles.
  • To elucidate the molecular mechanisms underlying activity-duration-dependent gene induction.

Main Methods:

  • Genome-scale experiments comparing gene expression changes induced by brief versus sustained neuronal activity.
  • Analysis of temporal waves of gene induction and their dependence on signaling pathways and translation.

Main Results:

  • Gene expression profiles accurately reflect the duration of neuronal activity.
  • Brief activity selectively induces a subset of genes corresponding to the first temporal wave of sustained activity induction.
  • Early gene induction requires MAPK/ERK signaling but not de novo translation, distinguishing it from later waves.

Conclusions:

  • The temporal structure of gene induction is shaped by distinct molecular mechanisms.
  • Different neuronal activity durations can be reliably decoded from specific gene expression signatures.
  • These findings enhance our understanding of how neuronal activity history is encoded at the molecular level.