Related Experiment Video
Updated: Feb 11, 2026

Using the Open-Source MALDI TOF-MS IDBac Pipeline for Analysis of Microbial Protein and Specialized Metabolite Data
Published on: May 15, 2019
MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites
Samuel J Hinshaw1, Amy H Y Lee1, Erin E Gill1
1Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada.
Summary:
Here, we present MetaBridge, a tool that collates protein interactors (curated metabolite-enzyme interactions) that influence the levels of specific metabolites including both biosynthetic and degradative enzymes. This enables network-based integrative analysis of metabolomics data with other omics data types. MetaBridge is designed to complement a systems-biology approach to analysis, pairing well with network analysis tools such as NetworkAnalyst.ca, but can be used in any bioinformatics workflow.
Availability And Implementation:
MetaBridge has been implemented as a web tool at https://www.metabridge.org, and the source code is available at https://github.com/samhinshaw/metabridge_shiny (GNU GPLv3).
More Related Videos
Related Concept Videos
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein Networks
Directing Proteins to the Rough Endoplasmic Reticulum
Network Covalent Solids
To break or to melt a covalent network solid, covalent bonds must be broken. Because covalent bonds are relatively strong, covalent network solids are typically...
Integration by Parts: Indefinite Integrals
Integration by Parts: Definite Integrals

