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Published on: June 19, 2013
Coinfection with Enteric Pathogens in East African Children with Acute Gastroenteritis-Associations and
Maria Andersson1, Jean-Claude Kabayiza2, Kristina Elfving1
1Department of Infectious Diseases, University of Gothenburg, Gothenburg, Sweden.
Insights
Coinfections are common in children with diarrhea, but specific combinations matter. Some pathogen pairs were less common, while *Shigella* and enteropathogenic *E. coli* showed a positive association, potentially worsening symptoms.
Area of Science:
- Microbiology
- Infectious Diseases
- Pediatrics
Background:
- Enteric coinfections are frequent in young children in low-income settings.
- Understanding pathogen combinations and their clinical significance is crucial.
Purpose of the Study:
- To investigate associations between specific enteric pathogen combinations in children under five.
- To determine the clinical importance of these coinfections.
Main Methods:
- Real-time polymerase chain reaction (PCR) was used to analyze fecal samples from children in Rwanda and Zanzibar.
- Pathogen co-detection and mono-detection frequencies were compared to identify pairwise associations.
- Analysis included children with and without acute diarrhea.
Main Results:
- Over 65% of samples showed multiple pathogen detections.
- Negative associations were found between rotavirus and *Shigella*, *Campylobacter*, or norovirus in patients.
- Positive associations were observed between enteropathogenic *E. coli* virulence genes and enterotoxigenic *E. coli* toxin genes.
- A significant positive association between *Shigella* and enteropathogenic *E. coli* (EPEC) *eae* was noted in patients, suggesting enhanced symptoms.
Conclusions:
- Coinfection interpretation depends on positive or negative associations.
- Specific pathogen interactions, like *Shigella*-EPEC, may influence disease severity.
- Further research is needed to understand the clinical impact of enteric coinfections.
Abstract:
Enteric coinfections among children in low-income countries are very common, but it is not well known if specific pathogen combinations are associated or have clinical importance. In this analysis, feces samples from children in Rwanda and Zanzibar less than 5 years of age, with (N = 994) or without (N = 324) acute diarrhea, were analyzed by real-time polymerase chain reaction targeting a wide range of pathogens. Associations were investigated by comparing co-detection and mono-detection frequencies for all pairwise pathogen combinations. More than one pathogen was detected in 840 samples (65%). A negative association (coinfections being less common than expected from probability) was observed for rotavirus in combination with Shigella, Campylobacter, or norovirus genogroup II, but only in patients, which is statistically expected for agents that independently cause diarrhea. A positive correlation was observed, in both patients and controls, between Ct (threshold cycle) values for certain virulence factor genes in enteropathogenic Escherichia coli (EPEC) (eae and bfpA) and toxin genes in enterotoxigenic E. coli (eltB and estA), allowing estimation of how often these genes were present in the same bacteria. A significant positive association in patients only was observed for Shigella and EPEC-eae, suggesting that this coinfection might interact in a manner that enhances symptoms. Although interaction between pathogens that affect symptoms is rare, this work emphasizes the importance and difference in interpretation of coinfections depending on whether they are positively or negatively associated.
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