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Updated: Feb 11, 2026

The Use of Chemostats in Microbial Systems Biology
Published on: October 14, 2013
Trans-algorithmic nature of learning in biological systems
1Arizona State University, Phoenix, AZ, 85004, USA. yury.shimansky@asu.edu.
Biological systems learn through trans-algorithmic processes, not just algorithms. Environmental active operating resources (AORs) drive modifications, enabling adaptation and survival beyond computational limits.
Area of Science:
- Theoretical Biology
- Systems Biology
- Biophysics
Background:
- Learning is crucial for biological systems' dynamic stability in changing environments.
- Current algorithmic models inadequately capture the full scope of biological learning.
- Physical hypercomputation has not yet successfully modeled general biological learning.
Purpose of the Study:
- To propose an alternative framework for understanding biological learning.
- To describe biosystems' learning through environmental interactions and modifications.
- To conceptualize learning as a trans-algorithmic process.
Main Methods:
- Describing biosystems as enumerating physical compositions via random modifications by active operating resources (AORs).
- Biosystems regulate modification intensity based on an optimality criterion for learning.
- Viewing biosystem evolution and adaptation as a motion in the space of algorithms.
Main Results:
- Biosystems learn via algorithmic regulation of environmentally imposed random modifications.
- The learning process is characterized as trans-algorithmic, exceeding simple algorithmic descriptions.
- Environmental AORs drive modifications, including population-level events like the death of unfit members.
Conclusions:
- Biological learning is fundamentally trans-algorithmic, driven by environmental interactions.
- This framework provides a more comprehensive understanding of life's adaptive capabilities.
- The model applies to diverse biosystems, from viruses to complex organisms.
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