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Updated: Feb 11, 2026

Identifying Protein-protein Interaction Sites Using Peptide Arrays
Published on: November 18, 2014
Myristoylation and Oligonucleotide Interaction Modulate Peptide and Protein Surface Properties: The Case of the HIV-1
Luis B P Socas1,2, Ernesto E Ambroggio1,2
1Departamento de Química Biológica-Ranwel Caputto, Facultad de Ciencias Químicas , Universidad Nacional de Córdoba , Haya de la Torre y Medina Allende s/n , Córdoba X5000HUA , Argentina.
Abstract:
Myristoylated proteins typically develop a tight association with membranes. One example is the matrix domain (MA) of the HIV-1 Gag protein. In addition, MA is able to bind the Sel25 RNA sequence, a ligand that can act as a competitor for the interaction with the membrane. These properties make HIV-1 MA an attractive molecule to understand how protein and peptide surface properties can be controlled by myristoylation and oligonucleotide interaction. In this line, we analyzed the stability, thermodynamics, and the topography of Langmuir monolayers composed of the myristoylated or unmyristoylated versions of MA in the presence or the absence of a single-strand DNA (ssDNASel25) analogue of the Sel25 RNA sequence. With a similar approach, we compared the MA surface properties with those obtained from monolayers of myristoylated and unmyristoylated MA-derived peptides (first 21 residues of the MA sequence). Our results show that the protein or peptide films are destabilized by the presence of ssDNASel25, inducing solubilization of the monolayer components into the bulk phase. In addition, the oligonucleotide affects the protein-protein or peptide-peptide lateral interactions, provoking interfacial topography changes of the monolayers, visualized by Brewster angle microscopy. Furthermore, we also show how the myristoyl group has major effects on the lateral stability and the elasticity of the monolayers. Altogether, here we propose a general model considering the effect of myristoylation and the interaction with oligonucleotides on the interfacial properties of MA and derived peptides. In this model, we introduce a new role of the core region of MA (sequence of MA after the 21st residue) that confers higher lateral interfacial stability to the protein.
Insights
Myristoylation enhances HIV-1 MA protein stability at interfaces, while DNA binding can destabilize it. The MA core region significantly improves interfacial stability, offering insights into myristoylation and oligonucleotide effects.
Area of Science:
- Biophysics
- Molecular Biology
- Surface Chemistry
Background:
- Myristoylated proteins, like HIV-1 Gag matrix domain (MA), associate strongly with membranes.
- MA binds Sel25 RNA, a potential membrane interaction competitor.
- Understanding myristoylation and oligonucleotide effects on protein surface properties is crucial.
Purpose of the Study:
- To analyze the stability, thermodynamics, and topography of myristoylated/unmyristoylated MA and MA-derived peptides.
- To investigate the impact of a Sel25 DNA analogue (ssDNASel25) on these interfacial properties.
- To elucidate the role of myristoylation and oligonucleotide interactions in modulating protein/peptide behavior at interfaces.
Main Methods:
- Formation and analysis of Langmuir monolayers using myristoylated and unmyristoylated MA and MA-derived peptides.
- Investigation of monolayer properties in the presence and absence of ssDNASel25.
- Characterization using surface pressure-area isotherms, thermodynamics, and Brewster angle microscopy (BAM).
Main Results:
- ssDNASel25 destabilized protein/peptide monolayers, causing component solubilization.
- Oligonucleotide binding altered lateral interactions and interfacial topography.
- The myristoyl group significantly impacted monolayer lateral stability and elasticity.
- The MA core region (residues beyond 21) enhanced lateral interfacial stability.
Conclusions:
- A model is proposed for myristoylation and oligonucleotide effects on MA interfacial properties.
- Myristoylation is key for enhanced lateral stability and elasticity.
- The MA core region plays a vital role in conferring superior lateral interfacial stability to the protein.
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