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Updated: Feb 11, 2026

Metagenomic Analysis of Silage
Published on: January 13, 2017
Identification of tick-borne pathogen diversity by metagenomic analysis in Haemaphysalis longicornis from Xinyang,
Lu Zhuang1,2,3, Juan Du1, Xiao-Ming Cui1
1State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dong-Da Street, Fengtai District, Beijing, 100071, People's Republic of China.
Background:
A wide variety of pathogens could be maintained and transmitted by Haemaphysalis longicornis. The aim of this study is to systematically examine the variety of pathogens carried by Haemaphysalis longicornis, an importnatn vector, in tick-borne diseases epidemic area, and to estimate the risk of human infection imposed by tick bites.
Methods:
Adult questing ticks were collected in Xinyang, central China. Genomic DNA and RNA were extracted from 144 H. longicornis ticks individually, and sequenced respectively as the templates for high-throughput sequencing. Clean reads were compared against the database of NCBI nucleotide collection and specific PCR was performed to confirm the presence of pathogen. Phylogenetic analysis was performed to explore the evolutionary status of pathogens.
Results:
The assignment of reads to taxa based on BLASTN results revealed the existence of several potential pathogens, including Anaplasma spp., Rickettsia spp., Babesia sp., as well as severe fever with thrombocytopenia syndrome bunyavirus (SFTSV). Comfirmantory PCR assays revealed the existence of Anaplasma bovis (13/144, 9.03%), Anaplasma centrale (2/144, 1.39%), Rickettsia heilongjiangensis (3/144, 2.08%), Rickettsia sp. LON-13 (1/144, 0.69%), Rickettsia raoultii (5/144, 3.47%), Babesia sp. (1/144, 0.69%). SFTSV accounted for the highest detected pathogen with a positive rate of 18.75% (27/144). Three of the ticks (2.08%) were co-infected with SFTSV and A. bovis.
Conclusion:
Our study provided a broadened list of microorganism that harbored by H. longicornis. In previously unrecognized endemic regions, prokaryotic and eukaryotic infection including Anaplasma spp., Rickettsiae spp., and Babesia spp. should be considered, along with the well-known SFTSV for patients with tick bites history. A novel Babesia species was identified in local natural foci, which needs further investigation in the future.
Insights
Haemaphysalis longicornis ticks in China carry diverse pathogens, including Anaplasma, Rickettsia, Babesia, and SFTSV. This highlights significant risks of tick-borne diseases in the region.
Area of Science:
- Veterinary Entomology
- Molecular Biology
- Public Health
Background:
- Haemaphysalis longicornis is a significant vector for various pathogens.
- Tick-borne diseases pose a considerable threat in endemic areas.
- Understanding pathogen carriage in vectors is crucial for disease prevention.
Purpose of the Study:
- To systematically identify pathogens harbored by Haemaphysalis longicornis in a tick-borne disease epidemic area in China.
- To assess the potential risk of human infection from tick bites in this region.
Main Methods:
- Adult Haemaphysalis longicornis ticks were collected in Xinyang, central China.
- High-throughput sequencing was used to analyze genomic DNA and RNA from individual ticks.
- Specific PCR assays and phylogenetic analysis were employed for pathogen confirmation and evolutionary study.
Main Results:
- Anaplasma spp. (A. bovis, A. centrale), Rickettsia spp. (R. heilongjiangensis, R. sp. LON-13, R. raoultii), and Babesia sp. were detected.
- Severe fever with thrombocytopenia syndrome bunyavirus (SFTSV) was the most prevalent pathogen (18.75%).
- Co-infection of SFTSV and Anaplasma bovis was observed in 2.08% of ticks.
Conclusions:
- Haemaphysalis longicornis harbors a wide array of prokaryotic and eukaryotic microorganisms.
- Infection with Anaplasma spp., Rickettsiae spp., Babesia spp., and SFTSV should be considered in patients with a history of tick bites in this region.
- A novel Babesia species was identified, warranting further investigation.
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