Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

The Soil Ecosystem02:23

The Soil Ecosystem

25.0K
Plants obtain inorganic minerals and water from the soil, which acts as a natural medium for land plants. The composition and quality of soil depend not only on the chemical constituents but also on the presence of living organisms. In general, soils contain three major components:
25.0K
Sulfur Assimilation01:20

Sulfur Assimilation

360
Sulfur is an essential element in biological systems, contributing to synthesizing key biomolecules, including amino acids such as cysteine and methionine, and cofactors such as coenzyme A and biotin. Microorganisms primarily assimilate sulfur as sulfate (SO₄²⁻) from the environment, which must undergo a series of biochemical transformations before it can be incorporated into cellular components. As sulfate is highly oxidized, it must undergo assimilatory sulfate reduction to...
360
Introduction to MATLAB01:24

Introduction to MATLAB

936
MATLAB stands for Matrix Laboratory. MathWorks developed MATLAB as a multi-paradigm numerical computing environment and proprietary programming language. It has evolved significantly over the years to become a tool utilized by engineers, scientists, and mathematicians for various tasks, including matrix calculations, developing algorithms, data analysis, and visualization. MATLAB's applications span various industries and disciplines. It's used in image and signal processing,...
936
Inorganic Nitrogen Assimilation01:22

Inorganic Nitrogen Assimilation

557
Nitrogen is an essential element in biological systems, forming a crucial component of proteins, nucleic acids, and other cellular constituents. Many bacteria and archaea acquire nitrogen in the form of nitrate (NO₃⁻) or ammonia (NH₃), which are then assimilated into biomolecules through specific enzymatic pathways.Assimilatory Nitrate ReductionWhen nitrate enters the cell, it undergoes a two-step reduction process known as assimilatory nitrate reduction. Initially, the enzyme...
557
Passive Filters01:27

Passive Filters

1.0K
Passive filters are utilized to shape the frequency spectrum of signals across a diverse array of applications. These filters, using only passive elements like resistors (R), inductors (L), and capacitors (C), are capable of selectively allowing or blocking certain frequency ranges without the need for external power sources.
Low-Pass Filters
Low-pass filters are designed to transmit signals with frequencies lower than the cutoff frequency, ωc, and attenuate those above it. The cutoff...
1.0K
Water and Mineral Acquisition02:34

Water and Mineral Acquisition

35.9K
Specialized tissues in plant roots have evolved to capture water, minerals, and some ions from the soil. Roots exhibit a variety of branching patterns that facilitate this process. The outermost root cells have specialized structures called root hairs that increase the root surface, thus increasing soil contact. Water can passively cross into roots, as the concentration of water in the soil is higher than that of the root tissue. Minerals, in contrast, are actively transported into root cells.
35.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Updating the German Psycholinguistic Word Toolbox with AI-Generated Estimates of Concreteness, Valence, Arousal, Age of Acquisition, and Familiarity.

Journal of cognition·2026
Same author

Assessing variations and spatial patterns of antibiotic resistance genes and water quality in irrigation pond water.

Environmental monitoring and assessment·2025
Same author

Spanish is not just one: A dataset of Spanish dialect recognition for LLMs.

Data in brief·2025
Same author

Simulating lexical decision times with large language models to supplement megastudies and crowdsourcing.

Behavior research methods·2025
Same author

Washing Posidonia oceanica with treated urban wastewater for biofilter and agricultural use.

The Science of the total environment·2025
Same author

Water metagenomes reflect physicochemical water quality throughout a model agricultural pond.

Frontiers in microbiology·2025

Related Experiment Video

Updated: Feb 10, 2026

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils
09:16

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils

Published on: November 25, 2016

17.4K

MATLAB algorithm to implement soil water data assimilation with the Ensemble Kalman Filter using HYDRUS.

Javier Valdes-Abellan1, Yakov Pachepsky2, Gonzalo Martinez3

  • 1Department of Civil Engineering, University of Alicante, Alicante, Spain.

Methodsx
|May 15, 2018
PubMed
Summary
This summary is machine-generated.

This study releases free Matlab code for data assimilation in hydrologic modeling. The Ensemble Kalman Filter method infers soil hydraulic properties using Richards equation, enhancing model accuracy.

Keywords:
Climate/soil EnKF efficiencyEnKFHydrusSoil water flux modelling

More Related Videos

The Participant-Reported Implementation Update and Score PRIUS: A Novel Method for Capturing Implementation-Related Data Over Time
06:05

The Participant-Reported Implementation Update and Score PRIUS: A Novel Method for Capturing Implementation-Related Data Over Time

Published on: February 19, 2021

1.8K
In Situ Soil Moisture Sensors in Undisturbed Soils
08:20

In Situ Soil Moisture Sensors in Undisturbed Soils

Published on: November 18, 2022

7.5K

Related Experiment Videos

Last Updated: Feb 10, 2026

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils
09:16

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils

Published on: November 25, 2016

17.4K
The Participant-Reported Implementation Update and Score PRIUS: A Novel Method for Capturing Implementation-Related Data Over Time
06:05

The Participant-Reported Implementation Update and Score PRIUS: A Novel Method for Capturing Implementation-Related Data Over Time

Published on: February 19, 2021

1.8K
In Situ Soil Moisture Sensors in Undisturbed Soils
08:20

In Situ Soil Moisture Sensors in Undisturbed Soils

Published on: November 18, 2022

7.5K

Area of Science:

  • Hydrology and Soil Science
  • Computational Modeling
  • Environmental Engineering

Background:

  • Data assimilation enhances hydrologic model accuracy by updating states and parameters.
  • Inferring soil hydraulic properties is crucial for soil water models based on Richards equation.
  • The Ensemble Kalman Filter (EnKF) is a widely used data assimilation technique.

Purpose of the Study:

  • To provide complete, unrestricted Matlab code for studying soil data assimilation efficiency.
  • To demonstrate the implementation of the EnKF method for inferring soil hydraulic properties.
  • To facilitate research under diverse soil and climatic conditions.

Main Methods:

  • Utilized the Ensemble Kalman Filter (EnKF) for data assimilation.
  • Solved Richards equation for soil water flow using Hydrus-1D software.
  • Integrated Hydrus-1D simulations with Matlab for EnKF implementation and analysis.

Main Results:

  • The released Matlab code enables efficient data assimilation for soil water models.
  • Demonstrated the EnKF method's capability in inferring soil hydraulic properties.
  • Code is adaptable for various soil and climate scenarios.

Conclusions:

  • The provided code serves as a valuable, unrestricted resource for researchers in hydrologic modeling.
  • EnKF is an effective technique for improving soil water model parameterization.
  • Open-source code facilitates reproducible research and further development.