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Pattern-based Search of Epigenomic Data Using GeNemo
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Distributed query-aware quantization for high-dimensional similarity searches.

Gheorghi Guzun1, Guadalupe Canahuate2

  • 1San Jose State University, San Jose, California.

Advances in Database Technology : Proceedings. International Conference on Extending Database Technology
|May 15, 2018
PubMed
Summary
This summary is machine-generated.

This study introduces a Query dependent Equi-Depth (QED) method for faster and more accurate high-dimensional similarity searches. QED improves nearest neighbor queries by using query-specific data quantization, enhancing classification accuracy and performance.

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Area of Science:

  • Data Mining
  • Machine Learning
  • Information Retrieval

Background:

  • Similarity is crucial for data exploration and nearest neighbor (NN) queries.
  • Traditional distance functions struggle in high-dimensional spaces due to dominating dissimilar dimensions.
  • Existing localized similarity functions use query-agnostic quantization, limiting accuracy.

Purpose of the Study:

  • To propose a novel Query dependent Equi-Depth (QED) on-the-fly quantization method.
  • To enhance the accuracy and efficiency of high-dimensional similarity searches.
  • To introduce a distributed algorithm for efficient QED computation.

Main Methods:

  • Developed a query-dependent, on-the-fly quantization technique (QED).
  • Quantization is applied per dimension at query time.
  • Localized scores are computed for a fraction of points, with a penalty for others.

Main Results:

  • QED improves the quality of the distance metric in high-dimensional data.
  • Achieved significant query time performance improvements, up to an order of magnitude faster than baseline methods.
  • Demonstrated enhanced classification accuracy on high-dimensional datasets.

Conclusions:

  • QED offers a superior approach to high-dimensional similarity searching compared to traditional and existing localized methods.
  • The proposed distributed algorithm efficiently computes QED, enabling practical application.
  • QED effectively filters irrelevant data, leading to substantial performance gains.